Accurate contamination removal using locality-sensitive hashing
☆14Jul 8, 2023Updated 2 years ago
Alternatives and similar repositories for CONSULT
Users that are interested in CONSULT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- distance based phylogenetic placement☆27Feb 28, 2024Updated 2 years ago
- Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees☆13Jan 31, 2025Updated last year
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆42Apr 2, 2024Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Sep 28, 2023Updated 2 years ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22Mar 10, 2026Updated 2 weeks ago
- ☆21Mar 19, 2025Updated last year
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 2 years ago
- alignment and assembly free☆14May 29, 2023Updated 2 years ago
- Haploidy and Size Completeness Estimation☆14Apr 11, 2024Updated last year
- A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses☆24Mar 7, 2025Updated last year
- Linear-time rooting of phylogenetic trees☆18Jun 12, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆229Jan 4, 2026Updated 2 months ago
- Get microbial sequence data easier and faster☆28Nov 7, 2019Updated 6 years ago
- Sequence analysis library used by Eddy/Rivas lab code☆52Feb 16, 2026Updated last month
- ☆16Jun 21, 2023Updated 2 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Step by step tutorial for CAGE analysis☆10Sep 18, 2025Updated 6 months ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Nov 14, 2025Updated 4 months ago
- Visualize and perform a multitude of operations on newick files☆17Mar 7, 2022Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Oct 24, 2022Updated 3 years ago
- Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.☆11Apr 15, 2022Updated 3 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Jul 23, 2020Updated 5 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆38Mar 13, 2026Updated 2 weeks ago
- Personal diploid genome creation and coordinate conversion☆30Apr 1, 2025Updated 11 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Implementation of the TreeShrink problem☆55Sep 13, 2024Updated last year
- ☆33Mar 16, 2026Updated last week
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆15Feb 19, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆10Jun 16, 2022Updated 3 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆12Feb 6, 2026Updated last month
- Automatic evaluation of HGTs☆30Jan 31, 2025Updated last year
- Source code for SimBac, a bacterial genome simulator☆14Sep 20, 2024Updated last year
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆142Apr 6, 2025Updated 11 months ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago