datarail / gr_metrics
☆15Updated last year
Related projects: ⓘ
- ☆17Updated 4 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)☆9Updated last year
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆26Updated last month
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 3 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated 3 weeks ago
- Mean Alterations Using Discrete Expression☆13Updated 5 months ago
- Differential Mutation Analysis☆11Updated 4 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 2 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 2 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 2 years ago
- Toolbox package for organizing and working with TCGA data☆23Updated 3 weeks ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆24Updated last year
- ☆15Updated 7 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆17Updated 3 months ago
- Explore the cancer relevance of your gene list☆49Updated last week
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆15Updated last year
- Bioinformatics for Benched Biologists☆22Updated 4 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year
- Toolkit for benchmarking fusion transcript predictions☆17Updated 3 weeks ago
- R package for obtaining TCR alpha-beta sequence pairs☆8Updated 7 years ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Updated 4 years ago
- Summary statistics for repertoires☆16Updated last year
- Single cell interactive plotting tools☆23Updated 4 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆23Updated 2 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆12Updated last month
- Repository for signature genes from Immune Cell Atlas☆18Updated 4 years ago
- A GenePattern module for running the ssGSEA method☆11Updated last year