Alternatives and similar repositories for gr_metrics

Users that are interested in gr_metrics are comparing it to the libraries listed below

• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆26Updated 2 years ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆16Updated 3 months ago
• ELELAB / MoonlightR
  ☆17Updated last year
• benoukraflab / TFregulomeR-old
  TFregulomeR reveals transcription factors’ context-specific features and functions
  ☆16Updated 3 years ago
• hfang-bristol / XGR
  An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)
  ☆10Updated 2 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 5 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 4 months ago
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆12Updated 2 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• pachterlab / RMEJLBASBMP_2024
  Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
  ☆19Updated 5 months ago
• sellerslab / gemini
  GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens
  ☆16Updated 2 years ago
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆14Updated last week
• cancerdatasci / ceres
  Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
  ☆29Updated 6 years ago
• slowkow / cellguide
  🧭 Navigate single-cell RNA-seq datasets in your web browser.
  ☆29Updated 2 years ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated 2 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 5 months ago
• KirstLab / asc_seurat
  ☆24Updated 11 months ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• cancerdatasci / demeter
  Deconvolution of seed effects from gene effects in large scale RNAi screens
  ☆11Updated 7 years ago
• califano-lab / OncoSig
  Code to run OncoSig Analyses
  ☆18Updated 4 years ago
• fperraudeau / singlecellworkflow
  Tutorial for the analysis of scRNA-seq data in R
  ☆18Updated 6 years ago
• fusiontranscripts / FusionBenchmarking
  Toolkit for benchmarking fusion transcript predictions
  ☆19Updated 10 months ago
• TheJacksonLaboratory / PDX-Analysis-Workflows
  ☆12Updated 6 years ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆35Updated 10 months ago