datarail / gr_metrics
☆15Updated last year
Alternatives and similar repositories for gr_metrics:
Users that are interested in gr_metrics are comparing it to the libraries listed below
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)☆10Updated 2 years ago
- A GenePattern module for running the ssGSEA method☆13Updated last week
- ☆17Updated 9 months ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated 2 weeks ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 2 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year
- 🐶 hlabud: HLA genotype analysis in R☆16Updated last month
- A Python package for gene network analysis☆32Updated 2 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Explore the cancer relevance of your gene list☆50Updated last week
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Summary statistics for repertoires☆16Updated 2 years ago
- A collection of useful functions for bioinformatics data analysis☆20Updated 8 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Toolkit for benchmarking fusion transcript predictions☆18Updated 6 months ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆18Updated last month
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 3 years ago
- ☆12Updated last year
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆29Updated last month
- ☆11Updated 10 months ago
- Reproducible Workflows, curated at the Fred Hutch☆12Updated 5 years ago
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆10Updated 6 years ago