saezlab / CARNIVALLinks
CAusal Reasoning for Network Identification with integer VALue programming in R
☆59Updated last year
Alternatives and similar repositories for CARNIVAL
Users that are interested in CARNIVAL are comparing it to the libraries listed below
Sorting:
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated last month
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 4 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆27Updated 8 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆73Updated 3 weeks ago
- Geometry-preserving random sampling☆89Updated 9 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- ☆44Updated 9 months ago
- ☆47Updated 3 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated last week
- R package for Pathway RespOnsive GENe activity inference☆107Updated 2 years ago
- Using BCR and expression for sequence embedding☆25Updated this week
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆65Updated 2 years ago
- ☆61Updated 4 years ago
- R package for the analysis of single-cell immune repertoires☆43Updated 6 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- R client for the OmniPath web service☆139Updated last month
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 8 months ago
- An R interface to enrichR☆91Updated 6 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Latent Embedding Multivariate Regression☆94Updated 9 months ago
- R package to access DoRothEA's regulons☆149Updated last year
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆84Updated 11 months ago
- ☆61Updated 5 years ago
- software to detect doublets☆93Updated 7 months ago