saezlab / CARNIVALLinks
CAusal Reasoning for Network Identification with integer VALue programming in R
☆61Updated 2 years ago
Alternatives and similar repositories for CARNIVAL
Users that are interested in CARNIVAL are comparing it to the libraries listed below
Sorting:
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆30Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated 2 weeks ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- R package for the analysis of single-cell immune repertoires☆43Updated 10 months ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆83Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆88Updated last week
- A repository of pipelines for single-cell data in Nextflow DSL2☆79Updated 2 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 8 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆92Updated 6 months ago
- Signac☆26Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- ☆44Updated last year
- Using BCR and expression for sequence embedding☆25Updated 2 weeks ago
- ☆61Updated 4 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- Using TCR and expression for sequence embedding☆60Updated 4 months ago
- ☆46Updated 3 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 6 years ago
- R package to access DoRothEA's regulons☆152Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 weeks ago
- An R interface to enrichR☆93Updated 10 months ago
- Normalize CITEseq Data☆66Updated last month
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 2 months ago
- Latent Embedding Multivariate Regression☆97Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 3 weeks ago
- ☆62Updated 5 years ago