Alternatives and similar repositories for CARNIVAL:

Users that are interested in CARNIVAL are comparing it to the libraries listed below

• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated last month
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆73Updated 11 months ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated 2 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• niaid / dsb
  Normalize CITEseq Data
  ☆65Updated this week
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆80Updated 5 months ago
• cellgeni / batchbench
  ☆46Updated 2 years ago
• cellatlas / human
  ☆42Updated 5 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆143Updated last year
• KChen-lab / METAFlux
  ☆61Updated 9 months ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆69Updated this week
• Danko-Lab / TED
  a fully Bayesian approach to deconvolve tumor microenvironment
  ☆60Updated 2 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated last year
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆66Updated 10 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆77Updated 7 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 10 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated this week
• hukai916 / scATACpipe
  ☆27Updated 5 months ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆90Updated 3 months ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆50Updated last year
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆25Updated 9 months ago
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆42Updated 7 months ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• lcmmichielsen / scHPL
  ☆35Updated last month
• lhe17 / nebula
  ☆37Updated 2 weeks ago
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆39Updated last year
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆53Updated 2 months ago
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆45Updated last year
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆29Updated 7 months ago