saezlab / CARNIVALLinks
CAusal Reasoning for Network Identification with integer VALue programming in R
☆59Updated last year
Alternatives and similar repositories for CARNIVAL
Users that are interested in CARNIVAL are comparing it to the libraries listed below
Sorting:
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- ☆44Updated 10 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 4 months ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆27Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- Unified access to several second-generation deconvolution methods☆74Updated last week
- ☆47Updated 3 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- R package to access DoRothEA's regulons☆150Updated last year
- Using BCR and expression for sequence embedding☆25Updated 3 weeks ago
- R package for the analysis of single-cell immune repertoires☆43Updated 7 months ago
- Signac☆25Updated 2 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Normalize CITEseq Data☆66Updated 5 months ago
- Geometry-preserving random sampling☆89Updated 10 months ago
- An R interface to enrichR☆92Updated 7 months ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 8 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 3 weeks ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆67Updated 2 years ago
- ☆43Updated last year
- Latent Embedding Multivariate Regression☆94Updated 9 months ago
- ☆35Updated 6 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆60Updated last year
- Using TCR and expression for sequence embedding☆58Updated 3 weeks ago
- ☆61Updated 4 years ago