CAusal Reasoning for Network Identification with integer VALue programming in R
☆62Dec 6, 2023Updated 2 years ago
Alternatives and similar repositories for CARNIVAL
Users that are interested in CARNIVAL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to access DoRothEA's regulons☆156Feb 24, 2024Updated 2 years ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆13Jun 21, 2022Updated 3 years ago
- R package for Pathway RespOnsive GENe activity inference☆125Jan 30, 2023Updated 3 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆69Jun 4, 2026Updated last week
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python package for single-cell spatial image analysis.☆18Aug 24, 2023Updated 2 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆57Apr 14, 2023Updated 3 years ago
- R client for the OmniPath web service☆166Apr 29, 2026Updated last month
- Single-cell Hierarchical Poisson Factorization☆74Feb 14, 2026Updated 3 months ago
- ☆11Aug 21, 2024Updated last year
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Difference in Intercellular Communication from scRNA-seq data☆25Oct 14, 2025Updated 8 months ago
- Cancer Dependency Map package☆33Aug 16, 2024Updated last year
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Jul 25, 2022Updated 3 years ago
- ☆11Mar 2, 2021Updated 5 years ago
- LIANA+: an all-in-one framework for cell-cell communication☆294May 26, 2026Updated 2 weeks ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 7 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 7 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NicheNet: predict active ligand-target links between interacting cells☆656Jun 1, 2026Updated last week
- Connect the dots in networks.☆21Aug 28, 2020Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆37Jul 1, 2024Updated last year
- Differential Count Data Analysis Toolbox☆61Feb 5, 2024Updated 2 years ago
- ☆364Dec 9, 2021Updated 4 years ago
- Spatial direct messaging detected by bivariate Moran☆32Jul 16, 2025Updated 10 months ago
- ☆15Sep 12, 2023Updated 2 years ago
- Spatial omics analysis toolbox☆376Jun 2, 2026Updated last week
- R package for WebGestalt☆38Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆30May 19, 2017Updated 9 years ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆69Dec 3, 2025Updated 6 months ago
- Subtyping tool for multi-omic data☆14Jul 6, 2022Updated 3 years ago
- ☆35Sep 28, 2020Updated 5 years ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆162Jun 6, 2026Updated last week
- ☆30Mar 18, 2022Updated 4 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆78Mar 28, 2026Updated 2 months ago