scverse / muonLinks
muon is a multimodal omics Python framework
☆236Updated 3 months ago
Alternatives and similar repositories for muon
Users that are interested in muon are comparing it to the libraries listed below
Sorting:
- Python package to perform enrichment analysis from omics data.☆196Updated this week
- A scanpy extension to analyse single-cell TCR and BCR data.☆231Updated last week
- Differential expression analysis for single-cell RNA-seq data.☆197Updated 3 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆331Updated 10 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 5 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆208Updated 3 months ago
- Reference mapping for single-cell genomics☆365Updated last week
- Single-cell epigenomics analysis tools☆260Updated this week
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆223Updated last month
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆162Updated last week
- R package to access DoRothEA's regulons☆148Updated last year
- A tool for detecting somatic variants in single cell data☆205Updated 8 months ago
- Benchmarking analysis of data integration tools☆357Updated 4 months ago
- Perturbation Analysis in the scverse ecosystem.☆177Updated this week
- Detect doublets in single-cell RNA-seq data☆151Updated 4 years ago
- data and model repository for single-cell data☆136Updated last year
- Tabula Muris Senis☆103Updated last year
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆192Updated last week
- A tool for semi-automatic cell type classification☆367Updated 3 weeks ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆163Updated last year
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆156Updated last week
- Clustering scRNAseq by genotypes☆181Updated 6 months ago
- Interpretation of cell states using reference single-cell maps☆276Updated last week
- Scaling Single Cell Analysis to Millions of Cells☆210Updated 2 weeks ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆114Updated last week
- Batch balanced KNN☆161Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆224Updated 4 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆204Updated 9 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆160Updated 3 months ago
- CZ CELLxGENE Discover Census☆100Updated this week