muon is a multimodal omics Python framework
☆279Oct 19, 2026Updated last week
Alternatives and similar repositories for muon
Users that are interested in muon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multimodal Data (.h5mu) implementation for Python☆134Updated this week
- Annotated data.☆783Updated this week
- Spatial Single Cell Analysis in Python☆612Updated this week
- A scanpy extension to analyse single-cell TCR and BCR data.☆268Updated this week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,720Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Single-cell epigenomics analysis tools☆329Sep 12, 2026Updated last month
- Single-cell analysis in Python. Scales to >100M cells.☆2,599Updated this week
- Cookiecutter template for scverse☆91Updated this week
- Python package to perform enrichment analysis from omics data.☆300Updated this week
- Single-cell perturbation analysis☆355Updated this week
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆75Jul 9, 2026Updated 3 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆153Dec 5, 2024Updated last year
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆289Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Benchmarking analysis of data integration tools☆435Apr 27, 2026Updated 6 months ago
- CellRank: dynamics from multi-view single-cell data☆459Oct 14, 2026Updated 2 weeks ago
- Formalizing and benchmarking open problems in single-cell genomics☆443Oct 2, 2026Updated 3 weeks ago
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆203Aug 24, 2026Updated 2 months ago
- Batch balanced KNN☆180Oct 11, 2023Updated 3 years ago
- Differential expression analysis for single-cell RNA-seq data.☆204Oct 21, 2025Updated last year
- Multi-Omics Factor Analysis☆430Sep 10, 2026Updated last month
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆768Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆408Updated this week
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆269Jan 16, 2026Updated 9 months ago
- Work with trained factor models in Python☆41Oct 22, 2024Updated 2 years ago
- ☆68May 17, 2026Updated 5 months ago
- data and model repository for single-cell data☆135Dec 21, 2023Updated 2 years ago
- Single cell trajectory detection☆343Sep 23, 2026Updated last month
- LIANA+: an all-in-one framework for cell-cell communication☆324Oct 9, 2026Updated 3 weeks ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Sep 24, 2026Updated last month
- Genomic interval operations on Pandas DataFrames☆196Oct 5, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Flow & mass cytometry analytics.☆61Oct 19, 2026Updated last week
- A Bayesian model for compositional single-cell data analysis☆204Jan 13, 2026Updated 9 months ago
- Links between modalities in mudata☆17Oct 16, 2026Updated last week
- Single cell perturbation prediction☆361Dec 5, 2024Updated last year
- An open and interoperable data framework for spatial omics data☆404Updated this week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆511Oct 15, 2026Updated 2 weeks ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆483Feb 9, 2026Updated 8 months ago