scverse / muonLinks
muon is a multimodal omics Python framework
☆257Updated 3 weeks ago
Alternatives and similar repositories for muon
Users that are interested in muon are comparing it to the libraries listed below
Sorting:
- Python package to perform enrichment analysis from omics data.☆245Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.☆242Updated last week
- Differential expression analysis for single-cell RNA-seq data.☆205Updated 2 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆150Updated last year
- LIANA+: an all-in-one framework for cell-cell communication☆254Updated 2 weeks ago
- Single-cell perturbation analysis☆225Updated this week
- Batch balanced KNN☆176Updated 2 years ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆284Updated last week
- Reference mapping for single-cell genomics☆396Updated 3 weeks ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆182Updated 2 months ago
- Single-cell epigenomics analysis tools☆301Updated last week
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆234Updated 2 months ago
- Multimodal Data (.h5mu) implementation for Python☆105Updated 3 weeks ago
- Scanpy Tutorials.☆231Updated last week
- A tool for semi-automatic cell type classification☆440Updated this week
- data and model repository for single-cell data☆136Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆159Updated 5 years ago
- Panoramic stitching of single cell data☆293Updated 5 months ago
- Benchmarking analysis of data integration tools☆399Updated 3 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆178Updated last week
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆246Updated last year
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆231Updated 5 years ago
- CellRank: dynamics from multi-view single-cell data☆411Updated last month
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆230Updated 6 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆368Updated 5 months ago
- Test genes for Spatial Variation☆178Updated last year
- CZ CELLxGENE Discover Census☆114Updated last week
- Scaling Single Cell Analysis to Millions of Cells☆253Updated 2 weeks ago
- Convert between AnnData and SingleCellExperiment☆143Updated last week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆395Updated 4 months ago