nlapier2 / MetalignLinks
Metalign: efficient alignment-based metagenomic profiling via containment min hash
☆33Updated last year
Alternatives and similar repositories for Metalign
Users that are interested in Metalign are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆29Updated 2 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 4 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- Strain Resolution ON Graphs☆47Updated last year
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Scalable creating/updating of metagenome profiling databases☆60Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 7 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Implementation of Krona to QIIME2☆16Updated last year
- Hitting associations with k-mers☆45Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 2 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Metagenomics microbial abundance quantification☆28Updated 2 years ago
- MIRA sequence assembler☆29Updated 5 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- ☆28Updated last month
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆16Updated last year
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago