nlapier2 / Metalign
Metalign: efficient alignment-based metagenomic profiling via containment min hash
☆33Updated last year
Alternatives and similar repositories for Metalign:
Users that are interested in Metalign are comparing it to the libraries listed below
- Find Unique genomic Regions☆29Updated last month
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Hitting associations with k-mers☆45Updated 2 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆38Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Scalable creating/updating of metagenome profiling databases☆60Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆36Updated last year
- REINDEER REad Index for abuNDancE quERy☆57Updated 7 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- Metagenomics microbial abundance quantification☆27Updated 2 years ago
- Graph-based assembly phasing☆73Updated 4 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 3 years ago
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 4 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆29Updated last year
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- De novo clustering of long transcript reads into genes☆56Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- crab go snap snap☆37Updated 3 weeks ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago