nlapier2 / MetalignLinks
Metalign: efficient alignment-based metagenomic profiling via containment min hash
☆33Updated 2 years ago
Alternatives and similar repositories for Metalign
Users that are interested in Metalign are comparing it to the libraries listed below
Sorting:
- Hitting associations with k-mers☆44Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated last month
- Find Unique genomic Regions☆30Updated 3 weeks ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- ☆30Updated 2 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated last year
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 8 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Highly sensitive pathogen detection☆11Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆27Updated 8 years ago
- ☆26Updated 4 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆36Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- Pan-Genomic Matching Statistics☆53Updated last year
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 5 months ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 3 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago