☆20May 14, 2025Updated 11 months ago
Alternatives and similar repositories for mmseqs2-gpu-analysis
Users that are interested in mmseqs2-gpu-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Source code of Venus-MAXWELL: Efficient Learning of Protein-Mutation Stability Landscapes using Protein Language Models☆24Jun 3, 2025Updated 10 months ago
- Codebase of the paper "Aligning Protein Conformation Ensemble Generation with Physical Feedback" (ICML 2025)☆16Jul 6, 2025Updated 9 months ago
- Implementation of FoldMark: Safeguarding Protein Structure Generative Models with Distributional and Evolutionary Watermarking☆24Apr 19, 2026Updated 2 weeks ago
- Benchmarking scripts for Gaia☆15Apr 10, 2025Updated last year
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Jun 3, 2025Updated 10 months ago
- Cross-protein transfer learning for variant effect prediction☆20Sep 13, 2023Updated 2 years ago
- The official code repository of "OmniESI: A unified framework for enzyme-substrate interaction prediction with progressive conditional de…☆29Aug 26, 2025Updated 8 months ago
- OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."☆37Nov 18, 2025Updated 5 months ago
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆12Jul 18, 2023Updated 2 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- ☆134Mar 10, 2026Updated last month
- ☆23Jun 10, 2025Updated 10 months ago
- ☆79Aug 26, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆88Dec 3, 2025Updated 4 months ago
- Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model☆26Nov 18, 2024Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆67Feb 2, 2026Updated 3 months ago
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆83Oct 24, 2025Updated 6 months ago
- A geometric foundation model for enzyme retrieval with evolutionary insights.☆87Apr 21, 2026Updated last week
- gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling☆15Nov 6, 2025Updated 5 months ago
- ☆33Feb 5, 2025Updated last year
- Boltzina: Efficient and Accurate Virtual Screening via Docking-Guided Binding Prediction with Boltz-2☆90Apr 21, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 5 months ago
- Protein stability prediction using rewired protein generative models☆74Dec 25, 2025Updated 4 months ago
- Optimization of binding affinities in chemical space for drug discovery☆36Jan 31, 2023Updated 3 years ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆120Jan 28, 2026Updated 3 months ago
- ☆137Jun 3, 2025Updated 10 months ago
- ☆40Mar 7, 2026Updated last month
- Optimization of a Haplotype PairHMM class for GPU processing☆24Jan 31, 2017Updated 9 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 6 years ago
- Protein representation and design under a single training scheme☆24Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆247Mar 26, 2026Updated last month
- Code for designing biased protein states☆79Apr 15, 2026Updated 2 weeks ago
- Complete saturation mutagenesis of a protein using ESM☆17Feb 20, 2024Updated 2 years ago
- The Best Open Source LLM Code Interpreter☆17Sep 2, 2023Updated 2 years ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated last month
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Feb 14, 2023Updated 3 years ago
- ☆16Mar 28, 2025Updated last year