Alternatives and similar repositories for CLEF

Users that are interested in CLEF are comparing it to the libraries listed below

• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• Sanofi-Public / mRNA-LM
  ☆15Updated 11 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• MicroResearchLab / AMP-potency-prediction-EvoGradient
  A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…
  ☆41Updated 3 months ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆84Updated 8 months ago
• CSUBioGroup / DPFunc
  ☆57Updated 3 months ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 8 months ago
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆36Updated 2 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆41Updated 4 months ago
• kingstdio / ECRECer
  Dual-core Multi-agent Learning Framework For EC Number Prediction
  ☆21Updated last year
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆76Updated 2 months ago
• tymor22 / tm-vec
  ☆74Updated last year
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆12Updated 4 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆97Updated 9 months ago
• lyjps / Struct2GO
  Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information
  ☆29Updated last year
• clairemcwhite / vcmsa
  ☆30Updated 2 years ago
• Wangyj2023 / PepDiffusion
  ☆17Updated last year
• biomed-AI / GPSite
  Geometry-aware protein binding site predictor
  ☆25Updated last year
• Merck / bgc-pipeline
  ☆12Updated 11 months ago
• ntranoslab / esm-variants
  ☆82Updated 2 years ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆41Updated last year
• HUST-NingKang-Lab / BGC-Prophet
  A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …
  ☆21Updated last month
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆56Updated 7 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• lsbnb / amp_gan
  The GAN model for designing AMP
  ☆15Updated 3 months ago
• teevee112 / DeepLoc-2.0
  Multi-label subcellular localization and sorting signal prediction based on protein foundation models
  ☆20Updated last month
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆51Updated last year
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆38Updated 2 weeks ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 2 months ago