Alternatives and similar repositories for CLEF

Users that are interested in CLEF are comparing it to the libraries listed below

• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆119Updated last year
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• CSUBioGroup / DPFunc
  ☆50Updated last month
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆75Updated 6 months ago
• MicroResearchLab / AMP-potency-prediction-EvoGradient
  A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…
  ☆33Updated last month
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 6 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆39Updated last month
• kingstdio / ECRECer
  Dual-core Multi-agent Learning Framework For EC Number Prediction
  ☆20Updated 10 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• tymor22 / tm-vec
  ☆68Updated 11 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆94Updated 7 months ago
• Wangyj2023 / PepDiffusion
  ☆15Updated last year
• vttresearch / ActSeek
  Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.
  ☆25Updated 3 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated last week
• clairemcwhite / vcmsa
  ☆30Updated last year
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆12Updated 4 years ago
• JiangBioLab / DLpTCR
  Predicting immunogenic peptide recognized by TCR through ensemble deep learning
  ☆16Updated last year
• maovshao / PLMAlign
  PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity
  ☆20Updated last week
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆35Updated last year
• teevee112 / DeepLoc-2.0
  Multi-label subcellular localization and sorting signal prediction based on protein foundation models
  ☆20Updated last year
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆53Updated 11 months ago
• a96123155 / UTR-LM
  ☆90Updated 11 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated 3 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆187Updated this week
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• lyjps / Struct2GO
  Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information
  ☆27Updated last year
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆85Updated 4 months ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆125Updated 10 months ago