Alternatives and similar repositories for MetaGOflow

Users that are interested in MetaGOflow are comparing it to the libraries listed below

• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆247Updated 10 months ago
• rrwick / Perfect-bacterial-genome-tutorial
  ☆155Updated last year
• gbouras13 / pharokka
  fast phage annotation program
  ☆193Updated last week
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆283Updated 2 months ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆166Updated 9 months ago
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…
  ☆177Updated 2 months ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 10 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated 2 years ago
• cmks / DAS_Tool
  DAS Tool
  ☆169Updated last year
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆104Updated 2 months ago
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆287Updated this week
• AnantharamanLab / METABOLIC
  A scalable high-throughput metabolic and biogeochemical functional trait profiler
  ☆218Updated last year
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆262Updated last month
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆211Updated this week
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆292Updated last month
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆158Updated 7 months ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆207Updated last year
• nickjcroucher / gubbins
  Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
  ☆211Updated 5 months ago
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆223Updated 2 weeks ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆225Updated this week
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆280Updated last year
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆199Updated 4 months ago
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆143Updated 2 years ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆279Updated 3 weeks ago
• anw-sh / silva-138_classifiers
  Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
  ☆18Updated last year
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆147Updated last week
• AnantharamanLab / VIBRANT
  Virus Identification By iteRative ANnoTation
  ☆184Updated last year
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆146Updated last month
• widdowquinn / pyani
  Application and Python module for average nucleotide identity analyses of microbes.
  ☆217Updated 7 months ago
• wwood / singlem
  Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes
  ☆179Updated last week