enasequence / ena-ftp-downloaderLinks
Java based tools for bulk downloading read/analysis files from ENA via FTP or Aspera.
☆42Updated 2 weeks ago
Alternatives and similar repositories for ena-ftp-downloader
Users that are interested in ena-ftp-downloader are comparing it to the libraries listed below
Sorting:
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated 3 weeks ago
- small RNA analysis from NGS data☆37Updated 9 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆98Updated 3 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆48Updated 10 months ago
- Notes on SNP-related tools and genome variation analysis☆28Updated 2 weeks ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆86Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated 3 weeks ago
- ☆41Updated last week
- WDL workflows for variant calling and assembly using ONT☆35Updated 3 weeks ago
- Drosophila transposable element canonical sequences☆28Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- A catalogue of available long read sequencing data analysis tools☆77Updated 3 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- A collection of command line tools for working with sequencing data☆51Updated last week
- Error correction of ONT transcript reads☆58Updated last year
- A tutorial on structural variant calling for short read sequencing data☆38Updated 8 months ago
- python plotly Circos from VCF☆38Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆40Updated 3 months ago
- ☆78Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆30Updated this week
- Same species annotation lift over pipeline.☆97Updated last year