enasequence / ena-ftp-downloaderView external linksLinks
Java based tools for bulk downloading read/analysis files from ENA via FTP or Aspera.
☆43Jun 13, 2025Updated 8 months ago
Alternatives and similar repositories for ena-ftp-downloader
Users that are interested in ena-ftp-downloader are comparing it to the libraries listed below
Sorting:
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- ☆15Jun 10, 2020Updated 5 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆93Aug 1, 2025Updated 6 months ago
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆17Jun 28, 2024Updated last year
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 13, 2025Updated 9 months ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆34Sep 20, 2022Updated 3 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- Virus Identification☆25May 26, 2025Updated 8 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆43Aug 20, 2025Updated 5 months ago
- Implementation of ToL genome assembly workflows☆26Feb 11, 2026Updated last week
- ☆10Jun 9, 2025Updated 8 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆27Apr 11, 2025Updated 10 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- ☆12Jun 7, 2024Updated last year
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆10Jul 8, 2025Updated 7 months ago
- ☆13Jan 7, 2026Updated last month
- ☆11Sep 16, 2021Updated 4 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆11Dec 16, 2024Updated last year
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 7 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- ☆82Nov 27, 2025Updated 2 months ago
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 8 months ago
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- ☆12May 12, 2019Updated 6 years ago
- A tool to easily create informative genomic feature plots☆17Dec 26, 2022Updated 3 years ago
- Bayesian enrichment estimation in R☆11Nov 15, 2025Updated 3 months ago
- ☆14Jan 28, 2026Updated 2 weeks ago
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Oct 9, 2024Updated last year
- ☆13Mar 28, 2018Updated 7 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Nov 28, 2023Updated 2 years ago
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆24Jan 31, 2026Updated 2 weeks ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 3 months ago