enasequence / enaBrowserToolsLinks
A collection of scripts to assist in the retrieval of data from the ENA Browser
☆86Updated last year
Alternatives and similar repositories for enaBrowserTools
Users that are interested in enaBrowserTools are comparing it to the libraries listed below
Sorting:
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- A catalogue of available long read sequencing data analysis tools☆78Updated 4 months ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆93Updated last month
- Demonstrating best practices for bioinformatics command line tools☆117Updated 4 years ago
- What should perfect bioinformatic tools be like?☆128Updated 2 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆106Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 2 months ago
- Match up paired end fastq files quickly and efficiently.☆150Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last month
- Merging paired-end reads and removing adapters☆44Updated 4 months ago
- reference-free transcriptome assembly for short and long reads☆108Updated last year
- Simple bacterial assembly and annotation pipeline☆75Updated this week
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆112Updated last year
- Tips for Nextflow and cheatsheet for channel operation☆78Updated 11 months ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆106Updated 3 weeks ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- seqfu - Sequece Fastx Utilities☆119Updated 5 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆45Updated last year
- Python programs for processing GFF3 files☆98Updated last year
- Error correction for Illumina RNA-seq reads☆67Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆98Updated 3 months ago
- A small-RNA sequencing analysis pipeline☆87Updated last month
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆101Updated last week
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Assembly and intrahost/low-frequency variant calling for viral samples☆138Updated last week
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago