enasequence / enaBrowserToolsLinks
A collection of scripts to assist in the retrieval of data from the ENA Browser
☆92Updated 5 months ago
Alternatives and similar repositories for enaBrowserTools
Users that are interested in enaBrowserTools are comparing it to the libraries listed below
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 weeks ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 5 months ago
- PHAST☆78Updated last week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Tips for Nextflow and cheatsheet for channel operation☆79Updated last year
- A small-RNA sequencing analysis pipeline☆98Updated 2 weeks ago
- Merging paired-end reads and removing adapters☆46Updated 2 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 4 months ago
- FEELnc : FlExible Extraction of LncRNA☆93Updated 5 months ago
- Powerful statistics for VCF files☆73Updated 2 months ago
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆92Updated 3 weeks ago
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated last month
- Genomic Interactive Visualization Engine☆146Updated 3 years ago
- seqfu - Sequece Fastx Utilities☆124Updated 3 weeks ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆112Updated 6 months ago
- Demonstrating best practices for bioinformatics command line tools☆117Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆117Updated last month
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆97Updated 2 months ago
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆124Updated 5 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- reference-free transcriptome assembly for short and long reads☆108Updated last year
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago