enasequence / enaBrowserToolsLinks
A collection of scripts to assist in the retrieval of data from the ENA Browser
☆91Updated 4 months ago
Alternatives and similar repositories for enaBrowserTools
Users that are interested in enaBrowserTools are comparing it to the libraries listed below
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 4 months ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 3 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆105Updated 2 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 11 months ago
- seqfu - Sequece Fastx Utilities☆124Updated this week
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆91Updated this week
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 8 months ago
- Demonstrating best practices for bioinformatics command line tools☆117Updated 5 years ago
- Simple bacterial assembly and annotation pipeline☆80Updated last month
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 4 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆52Updated 2 years ago
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- PHAST☆77Updated this week
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆97Updated 2 months ago
- reference-free transcriptome assembly for short and long reads☆107Updated last year
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Merging paired-end reads and removing adapters☆46Updated last month
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆51Updated 7 years ago
- A small-RNA sequencing analysis pipeline☆98Updated this week
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆123Updated 4 months ago
- Powerful statistics for VCF files☆73Updated last month