A collection of scripts to assist in the retrieval of data from the ENA Browser
☆94Aug 1, 2025Updated 7 months ago
Alternatives and similar repositories for enaBrowserTools
Users that are interested in enaBrowserTools are comparing it to the libraries listed below
Sorting:
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆11Dec 16, 2024Updated last year
- Java based tools for bulk downloading read/analysis files from ENA via FTP or Aspera.☆43Jun 13, 2025Updated 8 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Bifrost graph gene caller.☆98Jan 20, 2026Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 6 months ago
- Download FASTQ files from SRA or ENA repositories.☆370Feb 1, 2026Updated last month
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆297Aug 18, 2025Updated 6 months ago
- Reorients assembled microbial sequences☆135Aug 21, 2025Updated 6 months ago
- ☆17Apr 1, 2018Updated 7 years ago
- Rapid determination of appropriate reference genomes.☆100Jan 22, 2025Updated last year
- Get microbial sequence data easier and faster☆28Nov 7, 2019Updated 6 years ago
- FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code☆12Mar 6, 2018Updated 8 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 7 years ago
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated 6 months ago
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆15Feb 19, 2026Updated 2 weeks ago
- Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).☆50May 25, 2022Updated 3 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.☆89Feb 19, 2026Updated 2 weeks ago
- High-quality Nanopore-only genome polisher☆69Aug 16, 2024Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆255Dec 13, 2025Updated 2 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆178Jan 7, 2026Updated 2 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 4 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆63Nov 20, 2025Updated 3 months ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 6 years ago
- full taxonomer cython repository☆22Dec 1, 2019Updated 6 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Jun 11, 2024Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- Exposing public genomics data via computable and searchable metadata☆13Jul 9, 2024Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆15Dec 11, 2024Updated last year
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 6 years ago
- Ultra-rapid detection of viral variants directly from sequencing data☆36Feb 17, 2026Updated 2 weeks ago
- ☆15Feb 19, 2026Updated 2 weeks ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆167Feb 11, 2026Updated 3 weeks ago
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 3 years ago
- ☆82Nov 27, 2025Updated 3 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆351Dec 9, 2025Updated 2 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆539Feb 23, 2026Updated last week