enasequence / enaBrowserToolsLinks
A collection of scripts to assist in the retrieval of data from the ENA Browser
☆88Updated 2 months ago
Alternatives and similar repositories for enaBrowserTools
Users that are interested in enaBrowserTools are comparing it to the libraries listed below
Sorting:
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆125Updated 6 months ago
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆119Updated 2 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 3 months ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆74Updated 3 years ago
- reference-free transcriptome assembly for short and long reads☆109Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆94Updated this week
- Tip and tricks for BAM files☆86Updated 7 years ago
- Powerful statistics for VCF files☆72Updated 3 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated 2 months ago
- Merging paired-end reads and removing adapters☆46Updated last month
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- An efficient way to guess the library type of your RNA-Seq data.☆32Updated 3 years ago
- seqfu - Sequece Fastx Utilities☆121Updated 3 weeks ago
- Detecting contamination in NGS data and multi-species analysis☆79Updated 11 months ago
- gatk4 RNA variant calling pipeline☆54Updated last week
- ☆46Updated last week
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆51Updated 2 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago
- Simple bacterial assembly and annotation pipeline☆78Updated last week
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year