Standard database for the TBProfiler tool
☆30Apr 13, 2026Updated this week
Alternatives and similar repositories for tbdb
Users that are interested in tbdb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆133Mar 19, 2026Updated 3 weeks ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆47Sep 8, 2025Updated 7 months ago
- Bacterial surveillance pipeline.☆27Updated this week
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Antibiotic resistance prediction in minutes☆114Mar 27, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data☆12Updated this week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆11Jan 6, 2023Updated 3 years ago
- CRyPTIC data processing pipelines☆34Jul 18, 2024Updated last year
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆16Dec 9, 2025Updated 4 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Reference-based consensus creation☆60Apr 7, 2026Updated last week
- ☆20Apr 8, 2026Updated last week
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆61Mar 30, 2026Updated 2 weeks ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 5 months ago
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 4 months ago
- UPHL's Reference Free Pipeline☆28Updated this week
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated last month
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- ☆10Apr 16, 2025Updated last year
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆60Mar 23, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- µbinfie blog☆19Jul 21, 2025Updated 8 months ago
- Benchmark datasets for WGS analysis☆40Aug 4, 2019Updated 6 years ago
- ☆27Aug 2, 2023Updated 2 years ago
- Genome size estimation from long read overlaps☆82Updated this week
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆44Mar 26, 2026Updated 3 weeks ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆153Dec 31, 2025Updated 3 months ago
- ☆30Aug 28, 2025Updated 7 months ago
- Dockerfiles and documentation on tools for public health bioinformatics☆222Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆61Apr 10, 2026Updated last week
- Snakemake workflow to generate OTU tables from barcoded ONT data☆19Jan 29, 2025Updated last year
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 6 months ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆130Jan 22, 2025Updated last year
- Mass screening of contigs for antimicrobial and virulence genes☆486Apr 3, 2026Updated 2 weeks ago