Standard database for the TBProfiler tool
☆31Jun 23, 2026Updated 3 months ago
Alternatives and similar repositories for tbdb
Users that are interested in tbdb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆142Oct 11, 2026Updated last week
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆48Sep 8, 2025Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- Antibiotic resistance prediction in minutes☆122Mar 27, 2026Updated 6 months ago
- Profiling NTM WGS data☆19Sep 1, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆23Sep 22, 2026Updated 3 weeks ago
- This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data☆14Sep 21, 2026Updated 3 weeks ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- CRyPTIC data processing pipelines☆36Jul 18, 2024Updated 2 years ago
- Scripts and reference files to type Group A Streptococcus☆11Aug 31, 2026Updated last month
- Pipeline for creating comprehensive viral reference sets.☆12Sep 17, 2026Updated last month
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆19Aug 28, 2026Updated last month
- Reference-based consensus creation☆61Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 4 years ago
- ☆10Apr 16, 2025Updated last year
- Bacterial surveillance pipeline.☆30Sep 30, 2026Updated 2 weeks ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 11 months ago
- UPHL's Reference Free Pipeline☆29Oct 9, 2026Updated last week
- app to collapse Pango lineages for reporting☆14Oct 2, 2026Updated 2 weeks ago
- Sketch-based surveillance platform☆13Oct 9, 2026Updated last week
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆61Mar 23, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- µbinfie blog☆19Jul 21, 2025Updated last year
- Benchmark datasets for WGS analysis☆40Aug 4, 2019Updated 7 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆70Updated this week
- The tool for in silico serotyping☆65Oct 5, 2026Updated last week
- ☆28Aug 2, 2023Updated 3 years ago
- ☆16Jun 30, 2021Updated 5 years ago
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 2 months ago
- ☆37Aug 28, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- emm Automatic Isolate Labeller☆16Mar 25, 2025Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆157Dec 31, 2025Updated 9 months ago
- Dockerfiles and documentation on tools for public health bioinformatics☆226Oct 7, 2026Updated last week
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 4 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆61Updated this week
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆38Apr 24, 2025Updated last year