guokai8 / microbialLinks
Do microbiome analysis with dada2 and phyloseq object
☆13Updated 8 months ago
Alternatives and similar repositories for microbial
Users that are interested in microbial are comparing it to the libraries listed below
Sorting:
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- ☆13Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- An R package to visualize high-throughput sequencing data.☆12Updated 5 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- ☆27Updated last year
- ☆14Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆15Updated 2 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- ☆16Updated 2 years ago
- ☆32Updated last year
- Microbiome research☆20Updated 3 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- Processing support for Greengenes2☆12Updated last year
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Updated 2 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- ☆12Updated 7 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 9 months ago
- A microbiome analysis toolkit for R☆23Updated last year
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Updated 10 months ago
- ☆21Updated 9 months ago
- Dadaist2 🟨 Highway to R☆13Updated 3 months ago
- ☆13Updated 5 years ago