guokai8 / microbialLinks
Do microbiome analysis with dada2 and phyloseq object
☆14Updated 9 months ago
Alternatives and similar repositories for microbial
Users that are interested in microbial are comparing it to the libraries listed below
Sorting:
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- ☆14Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- Linear Decomposition Model☆24Updated 2 years ago
- ☆13Updated 2 years ago
- Microbiome research☆21Updated 3 years ago
- ☆12Updated 7 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 3 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 months ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 3 weeks ago
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 5 years ago
- Processing support for Greengenes2☆13Updated 2 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- ☆27Updated last year
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆15Updated 2 years ago
- R interface to the JBrowse 2 Linear Genome View.☆37Updated last year
- ☆27Updated last year
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Updated 7 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Updated 2 weeks ago
- 📊 An R package of RNA-seq workflow☆16Updated 3 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 2 months ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago