csf fork of fastqc for usage on selected reads of unaligned bam file
☆49Mar 7, 2013Updated 13 years ago
Alternatives and similar repositories for fastqc
Users that are interested in fastqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆15Feb 15, 2022Updated 4 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Feb 26, 2019Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Aug 17, 2016Updated 10 years ago
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 5 years ago
- my bin directory☆45Apr 7, 2026Updated 6 months ago
- This BLENDER has been sunsetted☆16Sep 27, 2024Updated 2 years ago
- Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis,…☆12May 16, 2023Updated 3 years ago
- ☆18Sep 28, 2015Updated 11 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Aug 3, 2026Updated 2 months ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- Automatically exported from code.google.com/p/ebi-metagenomics☆11Jun 25, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Galaxy wrappers for NCBI BLAST+ and related BLAST tools.☆76Apr 21, 2025Updated last year
- A 3'-end adapter contaminant trimmer☆98Jan 23, 2018Updated 8 years ago
- materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.☆48Oct 18, 2016Updated 9 years ago
- ☆24May 17, 2020Updated 6 years ago
- flexible barcode and adapter removal☆81Feb 10, 2023Updated 3 years ago
- fastx-utils using klib☆19Sep 1, 2020Updated 6 years ago
- ☆22Jul 2, 2020Updated 6 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Processing support for Greengenes2☆15Jul 31, 2023Updated 3 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆213May 14, 2020Updated 6 years ago
- Application for making ENCODE Blacklists☆348Apr 23, 2021Updated 5 years ago
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- Clone identification from single-cell data☆67Nov 10, 2022Updated 3 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆68Sep 1, 2026Updated last month
- ☆17Jan 9, 2023Updated 3 years ago
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Apr 26, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆98Sep 21, 2022Updated 4 years ago
- Tools for analyzing Slide-seq data☆32Oct 30, 2023Updated 2 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- an R package for ancestry analysis☆37Jan 9, 2019Updated 7 years ago
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆10Jul 20, 2022Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago