Alternatives and similar repositories for MTBseq_source:

Users that are interested in MTBseq_source are comparing it to the libraries listed below

• CPTR-ReSeqTB / UVP
  Mycobacterium tuberculosis next generation sequence analysis
  ☆24Updated 5 years ago
• adlape95 / Assembly-methods-nanopore
  Assembly methods for nanopore-based metagenomic sequencing: a comparative study
  ☆18Updated 4 years ago
• avierstr / amplicon_sorter
  Sorts amplicons from Nanopore sequencing data based on similarity
  ☆36Updated last month
• npbhavya / Kraken2-output-manipulation
  Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…
  ☆23Updated 9 months ago
• jhawkey / IS_mapper
  IS mapping software
  ☆53Updated 3 years ago
• DeniRibicic / q2ONT
  Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2
  ☆29Updated 5 years ago
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆80Updated 2 months ago
• rrwick / Metagenomics-Index-Correction
  ☆81Updated last year
• jodyphelan / tbdb
  Standard database for the TBProfiler tool
  ☆29Updated last month
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated last year
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆70Updated 3 years ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆123Updated last week
• epi2me-labs / wf-basecalling
  ☆39Updated last week
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆94Updated 2 weeks ago
• SorenKarst / longread_umi
  ☆77Updated 4 years ago
• phac-nml / sistr_cmd
  SISTR (Salmonella In Silico Typing Resource) command-line tool
  ☆27Updated this week
• smdabdoub / kraken-biom
  Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…
  ☆54Updated 3 years ago
• mjsull / Easyfig
  Development version of Easyfig
  ☆94Updated last year
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆126Updated last month
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆76Updated 7 months ago
• thanhleviet / ISfinder-sequences
  Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…
  ☆67Updated 4 years ago
• MDU-PHL / abritamr
  A pipeline for running AMRfinderPlus and collating results into functional classes
  ☆76Updated 8 months ago
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆40Updated 5 months ago
• egonozer / in_silico_pcr
  Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.
  ☆45Updated 3 weeks ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆117Updated last year
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆116Updated last month
• fanglab / nanodisco
  nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…
  ☆69Updated 2 years ago
• oschwengers / asap
  A scalable bacterial genome assembly, annotation and analysis pipeline
  ☆73Updated last year
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆105Updated 3 years ago
• rrwick / Bacsort
  a collection of scripts for organising bacterial genomes by species
  ☆76Updated 3 years ago