MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
☆48Sep 8, 2025Updated last year
Alternatives and similar repositories for MTBseq_source
Users that are interested in MTBseq_source are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mycobacterium tuberculosis next generation sequence analysis☆26Oct 11, 2019Updated 6 years ago
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆140Updated this week
- Standard database for the TBProfiler tool☆31Jun 23, 2026Updated 3 months ago
- Profiling NTM WGS data☆19Sep 1, 2026Updated 3 weeks ago
- ☆35Aug 28, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆20Aug 10, 2026Updated last month
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 3 months ago
- ☆16Jun 30, 2021Updated 5 years ago
- Antibiotic resistance prediction in minutes☆122Mar 27, 2026Updated 5 months ago
- The MLST pipeline developed by the PathOGiST research group☆39Nov 29, 2023Updated 2 years ago
- CRyPTIC data processing pipelines☆36Jul 18, 2024Updated 2 years ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated 2 years ago
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆20Dec 3, 2024Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 3 months ago
- ☆10Apr 16, 2025Updated last year
- ☆22Jun 1, 2026Updated 3 months ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 5 years ago
- Mycobacterium tuberculosis complex lineage typing☆10Jun 22, 2025Updated last year
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- Rapid haploid variant calling and core genome alignment☆593Dec 12, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Wide and Deep Neural Net for predicting TB resistance from genotypic data☆15Dec 9, 2019Updated 6 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆16Updated this week
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated last year
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆38Apr 24, 2025Updated last year
- Reference-based consensus creation☆61Sep 15, 2026Updated last week
- Cluster Investigation & Virus Epidemiology Tool☆51Jul 6, 2026Updated 2 months ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 11 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 6 months ago
- Comprehensive resistance detection from WGS data☆21Sep 4, 2026Updated 2 weeks ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Customer workshop materials☆19May 13, 2026Updated 4 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 27, 2026Updated last month
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆17Feb 19, 2026Updated 7 months ago