mrc-ide / skygrowthLinks
Phylodynamic inference
☆18Updated 5 years ago
Alternatives and similar repositories for skygrowth
Users that are interested in skygrowth are comparing it to the libraries listed below
Sorting:
- Estimating time trees from very large phylogenies☆27Updated last year
- Reconstruction of transmission trees using genomic data☆63Updated last year
- ☆11Updated 7 months ago
- Scalable relaxed clock phylogenetic dating☆25Updated 2 weeks ago
- ☆18Updated last month
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated last week
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., in prep.)☆34Updated 2 weeks ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last month
- A versatile simulation engine for stochastic population dynamics models.☆22Updated 2 years ago
- Programmatically interact with the GISAID database.☆78Updated last month
- R We There Yet?☆31Updated 5 months ago
- ☆20Updated 5 months ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 3 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 5 months ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆35Updated 3 months ago
- ☆19Updated last year
- Genome wide orthology inference and dNdS estimation☆96Updated 2 weeks ago
- ☆14Updated this week
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- ☆18Updated 5 months ago
- Metagenomics calibration R package☆20Updated 3 years ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆31Updated last week
- rhierbaps: R implementation of hierBAPS☆35Updated 4 years ago
- ☆12Updated 6 years ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆21Updated 4 months ago
- Population and Evolutionary Genetics Analysis System☆29Updated 6 months ago
- deep learning prediction of geographic location from individual genome sequences☆51Updated 8 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 4 months ago
- Phylogenetic inference using Stan☆23Updated 6 months ago
- ☆74Updated last year