Phylodynamic inference
☆23May 15, 2020Updated 6 years ago
Alternatives and similar repositories for skygrowth
Users that are interested in skygrowth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jul 20, 2026Updated 2 months ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆12Updated this week
- Infer transmission clusters from SNP and timing data☆17May 20, 2020Updated 6 years ago
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 2 months ago
- ☆20Nov 18, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago
- Estimating time trees from very large phylogenies☆27Sep 8, 2026Updated 3 weeks ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 13 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 4 years ago
- ☆13Sep 18, 2026Updated last week
- Reconstruction of transmission trees using genomic data☆72Jul 14, 2026Updated 2 months ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆26Jul 13, 2018Updated 8 years ago
- Tutorial on Bayesian phylogenetic analysis☆53Sep 21, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Within-species genome-wide dN/dS estimation from very many genomes☆25Oct 26, 2020Updated 5 years ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆10Jul 11, 2025Updated last year
- A multi-algorithmic framework for phylogenetic inference☆14Aug 25, 2026Updated last month
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆99Dec 9, 2025Updated 9 months ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cli…☆29Aug 9, 2026Updated last month
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Process very large Stan models efficiently☆14Dec 5, 2025Updated 9 months ago
- PhyDyn: Epidemiological modelling in BEAST☆21Sep 7, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Variant forecasting demo☆11Jul 20, 2026Updated 2 months ago
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 4 years ago
- Daily analyses of genomic SARS-CoV-2 data☆15Nov 8, 2022Updated 3 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Feb 25, 2023Updated 3 years ago
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Mar 21, 2025Updated last year
- Uses cDBG to count unitigs in bacterial populations☆20Feb 15, 2023Updated 3 years ago
- Unleash the full power of your k-mers!☆25Sep 18, 2026Updated last week
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Nov 11, 2025Updated 10 months ago
- All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis☆20Mar 30, 2021Updated 5 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆20Jun 30, 2026Updated 3 months ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- Some code for monkeypox☆10Jan 24, 2023Updated 3 years ago