Alternatives and similar repositories for skygrowth:

Users that are interested in skygrowth are comparing it to the libraries listed below

• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆26Updated 8 months ago
• sdellicour / seraphim
  R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…
  ☆32Updated last month
• emvolz-phylodynamics / mlesky
  ☆11Updated last month
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆61Updated last year
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated 11 months ago
• phylogeography / SpreaD3
  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
  ☆15Updated last year
• emvolz-phylodynamics / treestructure
  ☆17Updated last month
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆33Updated this week
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆37Updated 3 months ago
• grubaughlab / DENV_pipeline
  ☆16Updated last week
• duchene / phylomad
  ☆19Updated 9 months ago
• gtonkinhill / fastbaps
  A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
  ☆61Updated 2 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆48Updated 2 years ago
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆29Updated last month
• andersgs / harrietr
  An `R` package for various phylogenetic and evolutionary biology data manipulations
  ☆12Updated 7 years ago
• BDI-pathogens / phyloscanner
  Phylogenetics between and within hosts at once, all along the genome.
  ☆48Updated 5 months ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 6 years ago
• noemielefrancq / Phylowave_Learning-fitness-dynamics-pathogens-in-phylogenies
  Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"
  ☆15Updated this week
• flu-crew / TreeSort
  Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.
  ☆12Updated last month
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 2 years ago
• richardmleggett / MARTi
  Metagenomic Analysis in Real Time
  ☆23Updated this week
• danlwarren / RWTY
  R We There Yet?
  ☆30Updated 2 years ago
• virus-evolution / gofasta
  ☆35Updated 3 weeks ago
• CDCgov / aquascope
  ☆20Updated last month
• clockor2 / clockor2
  Inferring global and local strict molecular clocks using root-to-tip regression
  ☆11Updated 8 months ago
• gtonkinhill / rhierbaps
  rhierbaps: R implementation of hierBAPS
  ☆34Updated 3 years ago
• tgvaughan / MASTER
  A versatile simulation engine for stochastic population dynamics models.
  ☆22Updated 2 years ago
• gtonkinhill / pairsnp
  A set of scripts for calculating pairwise SNP distance
  ☆39Updated 2 years ago
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆29Updated 8 months ago
• tothuhien / Rlsd2
  An R-wrapper for lsd2
  ☆9Updated last year