mrc-ide / skygrowthLinks
Phylodynamic inference
☆21Updated 5 years ago
Alternatives and similar repositories for skygrowth
Users that are interested in skygrowth are comparing it to the libraries listed below
Sorting:
- Reconstruction of transmission trees using genomic data☆68Updated 2 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- Scalable relaxed clock phylogenetic dating☆27Updated 3 months ago
- ☆18Updated 2 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last week
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., submitted)☆37Updated last week
- ☆11Updated 10 months ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated 2 months ago
- Programmatically interact with the GISAID database.☆79Updated 4 months ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 5 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 7 months ago
- A phylogeny dating method using least-squares algorithms and criteria☆30Updated last year
- Genome wide orthology inference and dNdS estimation☆96Updated 3 months ago
- R We There Yet?☆32Updated 8 months ago
- Population and Evolutionary Genetics Analysis System☆29Updated 9 months ago
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- Tutorial on Bayesian phylogenetic analysis☆51Updated 8 years ago
- rhierbaps: R implementation of hierBAPS☆36Updated 4 years ago
- ☆19Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆14Updated 3 weeks ago
- ☆28Updated last year
- Phylogenetic inference using Stan☆23Updated 9 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- ☆15Updated last week
- ☆21Updated 8 months ago
- ☆26Updated 4 years ago
- A versatile simulation engine for stochastic population dynamics models.☆23Updated 3 years ago