spacetx / starfishLinks
starfish: unified pipelines for image-based transcriptomics
☆244Updated last week
Alternatives and similar repositories for starfish
Users that are interested in starfish are comparing it to the libraries listed below
Sorting:
- Toolbox for the analysis of smFISH images.☆73Updated 2 years ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆296Updated last week
- An open and interoperable data framework for spatial omics data☆343Updated this week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆261Updated last month
- muon is a multimodal omics Python framework☆262Updated 3 weeks ago
- ☆27Updated last year
- Spatial Single-Cell Analysis Toolkit☆108Updated last month
- A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces☆201Updated last month
- Bayesian Segmentation of Spatial Transcriptomics Data☆201Updated last year
- Subpopulation detection in high-dimensional single-cell data☆141Updated 5 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Multiple-choice microscopy pipeline☆145Updated last week
- A Python toolbox for quantitative, reproducible flow cytometry analysis☆212Updated last month
- Probabilistic cell segmentation for in situ spatial transcriptomics☆149Updated last month
- Spatial Single Cell Analysis in Python☆550Updated last week
- Differential expression analysis for single-cell RNA-seq data.☆206Updated 3 months ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated 2 years ago
- Spatial alignment of single cell transcriptomic data.☆352Updated 7 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- Multimodal Data (.h5mu) implementation for Python☆107Updated last week
- Repository for storing prototype functionality implementations for the BKP☆43Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.☆245Updated last week
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆96Updated last week
- Single cell trajectory detection☆292Updated 2 weeks ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆66Updated 7 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆265Updated 2 weeks ago
- Histology Topography Cytometry Analysis Toolbox☆69Updated 3 months ago
- CZ CELLxGENE Discover Census☆117Updated 3 weeks ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆234Updated 5 years ago