merfishtools / merfishtoolsLinks
MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provide Bayesian mechanisms for differential expression analysis.
☆14Updated 6 years ago
Alternatives and similar repositories for merfishtools
Users that are interested in merfishtools are comparing it to the libraries listed below
Sorting:
- ☆16Updated 9 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 3 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Updated 2 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Updated 5 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- ☆11Updated 8 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- Software for exploration of gene expression data from single-cell RNA sequencing.☆28Updated 6 years ago
- ☆12Updated last year
- ☆21Updated 8 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- ☆45Updated 9 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Updated 5 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 7 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆79Updated 4 months ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago