merfishtools / merfishtools
MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provide Bayesian mechanisms for differential expression analysis.
☆14Updated 5 years ago
Alternatives and similar repositories for merfishtools:
Users that are interested in merfishtools are comparing it to the libraries listed below
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- ☆16Updated 4 months ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Updated 2 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- ☆19Updated 7 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 3 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated last month
- Single cell interactive plotting tools☆23Updated 4 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- SIP: Significant Interaction Peak caller☆14Updated 2 weeks ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- ☆15Updated 7 months ago
- A suite for the analysis of CLIP-Seq datasets.☆12Updated 3 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 9 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Universal RObust Peak Annotator☆16Updated last year
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- Bam to Pandas DataFrame, quickly☆13Updated last month
- ☆21Updated 2 years ago
- ☆12Updated last year
- Fit generalized linear models in python.☆27Updated 2 years ago