urrutiag / destinLinks
Toolkit for single-cell analysis of chromatin accessibility
☆12Updated 5 years ago
Alternatives and similar repositories for destin
Users that are interested in destin are comparing it to the libraries listed below
Sorting:
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆34Updated last year
- ☆13Updated 11 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆17Updated 6 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆17Updated 2 years ago
- ☆19Updated 4 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Updated 6 years ago
- ☆28Updated 6 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 4 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ☆34Updated 6 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- ☆49Updated 10 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 4 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 7 months ago
- ☆19Updated 2 years ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- ☆21Updated last year
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago