urrutiag / destinView external linksLinks
Toolkit for single-cell analysis of chromatin accessibility
☆12Feb 27, 2020Updated 5 years ago
Alternatives and similar repositories for destin
Users that are interested in destin are comparing it to the libraries listed below
Sorting:
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Oct 9, 2019Updated 6 years ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Feb 27, 2019Updated 6 years ago
- A robust PCA method of tumor clone and evolution inference from single-cell sequencing data.☆12May 28, 2020Updated 5 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Aug 29, 2024Updated last year
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Nov 20, 2018Updated 7 years ago
- ☆16Apr 27, 2023Updated 2 years ago
- Single-cell COPy number Estimation☆16Dec 11, 2022Updated 3 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆11Dec 11, 2025Updated 2 months ago
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Feb 10, 2025Updated last year
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- Repository for signature genes from Immune Cell Atlas☆18Sep 25, 2019Updated 6 years ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Aug 23, 2023Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Jun 9, 2022Updated 3 years ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Oct 10, 2019Updated 6 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Sep 1, 2023Updated 2 years ago
- Java tools for analyzing Drop-seq data☆132Jan 15, 2026Updated last month
- scRNA-seq cell type identification☆44Oct 3, 2019Updated 6 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- R package to visualize scRNA sequencing data.☆20Feb 4, 2022Updated 4 years ago
- ☆21Jul 3, 2019Updated 6 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- consistent quantification of external RNA-seq data sets☆58Dec 21, 2023Updated 2 years ago
- A tool for evaluating RNA seq mapping☆22Jul 12, 2019Updated 6 years ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆30Sep 16, 2019Updated 6 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Nov 9, 2022Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Dec 23, 2019Updated 6 years ago
- Ordering gene-expression and functional events in single-cell experiments☆29Feb 8, 2026Updated last week
- <<------ Use SnapATAC!!☆26Mar 15, 2019Updated 6 years ago
- De novo adapter prediction algorithm for small RNA sequencing data☆24Mar 23, 2017Updated 8 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- Single-cell Hierarchical Poisson Factorization☆74Aug 9, 2022Updated 3 years ago
- R package with motifs for use with chromVAR☆29Nov 17, 2017Updated 8 years ago