urrutiag / destinLinks
Toolkit for single-cell analysis of chromatin accessibility
☆12Updated 5 years ago
Alternatives and similar repositories for destin
Users that are interested in destin are comparing it to the libraries listed below
Sorting:
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ☆19Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- ☆51Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- ☆34Updated 6 years ago
- ☆12Updated 6 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- Clone of the Bioconductor repository for the batchelor package.☆17Updated 6 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆17Updated 6 years ago
- Single-cell Case Control Analysis☆52Updated last week
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆22Updated 4 years ago