SUwonglab / scABC
☆19Updated 5 years ago
Alternatives and similar repositories for scABC:
Users that are interested in scABC are comparing it to the libraries listed below
- A study to compare methods for clustering of scRNA-seq data☆42Updated 6 months ago
- ☆16Updated 5 years ago
- ☆28Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- <<------ Use SnapATAC!!☆25Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 5 months ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 7 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆38Updated 4 years ago
- ☆35Updated 11 months ago
- SPATA Package for spatial gene expression analysis☆21Updated 2 years ago
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Updated 5 years ago
- scWGCNA☆56Updated 2 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆30Updated 6 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 10 months ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- ☆20Updated 5 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Updated 5 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆46Updated 7 months ago
- Functions for single cell data analysis☆29Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated 11 months ago