☆24Jul 3, 2019Updated 7 years ago
Alternatives and similar repositories for scABC
Users that are interested in scABC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆28Jan 28, 2020Updated 6 years ago
- Coupled clustering of single cell genomic data☆14Sep 21, 2021Updated 5 years ago
- ☆12Jul 13, 2018Updated 8 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆51Sep 1, 2023Updated 3 years ago
- ☆12Mar 18, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Feature Selection in scRNA-seq☆11Sep 9, 2021Updated 5 years ago
- SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection☆18Apr 26, 2021Updated 5 years ago
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆21Feb 24, 2024Updated 2 years ago
- <<------ Use SnapATAC!!☆26Mar 15, 2019Updated 7 years ago
- an easy deindex tool for illumina multiple barcodes sequencing☆12Jul 30, 2015Updated 11 years ago
- Clean up single-cell data☆11Dec 20, 2022Updated 3 years ago
- chromatin Variability Across Regions (of the genome!)☆198May 1, 2026Updated 6 months ago
- Benchmarking computational single cell ATAC-seq methods☆186Nov 30, 2020Updated 5 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆13Feb 27, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Simultaneous deep generative modeling and clustering of single cell genomic data☆33Nov 14, 2022Updated 3 years ago
- Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing☆15Dec 12, 2018Updated 7 years ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Feb 27, 2019Updated 7 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆24Aug 8, 2022Updated 4 years ago
- Turning the quasi-UMI method into a bioconductor package☆11Mar 3, 2021Updated 5 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆150Apr 5, 2024Updated 2 years ago
- Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data☆10Mar 6, 2019Updated 7 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆46Oct 7, 2025Updated last year
- Clustering through Imputation and Dimensionality Reduction☆64Sep 21, 2017Updated 9 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- A scalable method to infer fate specific gene regulatory network from single cell gene expression data☆10Jan 21, 2025Updated last year
- ☆10Oct 31, 2021Updated 5 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Jun 18, 2018Updated 8 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆18Jun 28, 2025Updated last year
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 5 years ago
- DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selection algorithm for cell type identification in s…☆12May 26, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code for tidymass2 manuscript☆11Dec 15, 2025Updated 10 months ago
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆14Apr 8, 2026Updated 6 months ago
- ☆15Jul 11, 2023Updated 3 years ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago