SUwonglab / scABC
☆19Updated 5 years ago
Alternatives and similar repositories for scABC:
Users that are interested in scABC are comparing it to the libraries listed below
- ☆28Updated 5 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- <<------ Use SnapATAC!!☆25Updated 5 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 5 months ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Updated 5 years ago
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- ☆16Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Updated 5 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 10 months ago
- Mapping the Functional Landscape of TCR Repertoire☆33Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆42Updated 6 months ago
- ☆35Updated 10 months ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Code for the MNN manuscript figures☆51Updated 6 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 6 months ago
- scWGCNA☆56Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- ☆38Updated 4 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆20Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆92Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago