Alternatives and similar repositories for LSFM-mouse-brain-atlas:

Users that are interested in LSFM-mouse-brain-atlas are comparing it to the libraries listed below

• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆15Updated last year
• bkntr / brainways
  Brainways
  ☆16Updated last month
• BIOP / abba_python
  ABBA, controlled from python
  ☆11Updated 3 weeks ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆22Updated last week
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated this week
• albert597 / TRAILMAP
  ☆45Updated 4 years ago
• mobie / mobie
  MultiModal Big Image Data Sharing and Exploration
  ☆14Updated 2 years ago
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆21Updated 2 years ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated last month
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆14Updated 2 years ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆21Updated last week
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated last week
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 4 years ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆40Updated last week
• saalfeldlab / bigwarp
  A tool for manual pointwise deformable registration using bigdataviewer.
  ☆28Updated last week
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆39Updated 4 months ago
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆22Updated 3 years ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆33Updated 2 years ago
• brainglobe / brainglobe-template-builder
  Build unbiased anatomical templates from individual images
  ☆11Updated last week
• BiAPoL / Quantitative_Bio_Image_Analysis_with_Python_2022
  This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.
  ☆15Updated 2 years ago
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated 4 months ago
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆16Updated 3 weeks ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 7 months ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆48Updated last week
• maweigert / spotipy
  ☆12Updated 11 months ago
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆91Updated last week
• AiviaCommunity / PythonForAivia
  Python scripts library for Aivia. Ask your questions on the forum >>
  ☆14Updated 5 months ago
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆36Updated last month
• bleach1by1 / BIRDS_plugin
  BIRDS plug-in on Fiji and attached jar package
  ☆18Updated 3 years ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated 7 months ago