Gubra-ApS / LSFM-mouse-brain-atlasLinks
☆19Updated 3 years ago
Alternatives and similar repositories for LSFM-mouse-brain-atlas
Users that are interested in LSFM-mouse-brain-atlas are comparing it to the libraries listed below
Sorting:
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Brainways☆22Updated 4 months ago
- ABBA, controlled from python☆17Updated last month
- Registration to BrainGlobe atlases in napari using Elastix☆28Updated this week
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- Tools for distributed alignment of massive images☆91Updated last week
- ☆46Updated 5 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated last month
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated last week
- The framework for quantification of neuronal anatomy☆55Updated last week
- Efficient cell detection in large images using cellfinder in napari☆22Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆135Updated last week
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆112Updated 3 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- ☆18Updated 3 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated last week
- MultiModal Big Image Data Sharing and Exploration☆18Updated 3 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- Standalone cellfinder cell detection algorithm☆20Updated 2 years ago
- BIRDS plug-in on Fiji and attached jar package