Alternatives and similar repositories for gsea-api:

Users that are interested in gsea-api are comparing it to the libraries listed below

• saezlab / ocean
  R package for metabolic enzyme enrichment anaylsis
  ☆12Updated 5 months ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 4 years ago
• aristoteleo / dynast-release
  Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
  ☆17Updated last year
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆32Updated 9 months ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated 2 years ago
• const-ae / transformGamPoi-Paper
  ☆26Updated last year
• COMBINE-lab / pyroe
  ☆16Updated 3 months ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 6 months ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated 2 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• cellatlas / human
  ☆42Updated 5 months ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 4 years ago
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆21Updated 2 years ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆55Updated last year
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆23Updated last week
• dcroote / singlecell-ige
  Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
  ☆10Updated 3 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated last year
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 2 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated 11 months ago
• yachielab / Interstellar
  INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads
  ☆17Updated 11 months ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• KellisLab / scdemon
  single-cell decorrelated module networks
  ☆20Updated 7 months ago
• GSEA-MSigDB / ssGSEA-gpmodule
  A GenePattern module for running the ssGSEA method
  ☆13Updated last month
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆40Updated 2 years ago