krassowski / gsea-apiLinks
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
☆16Updated 2 years ago
Alternatives and similar repositories for gsea-api
Users that are interested in gsea-api are comparing it to the libraries listed below
Sorting:
- R package for metabolic enzyme enrichment anaylsis☆12Updated 2 months ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Updated 4 months ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 2 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆71Updated 3 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 3 months ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Automated cell filtering for single-cell RNA sequencing data☆25Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆63Updated last year
- Work with trained factor models in Python☆36Updated last year
- Single-cell multi-omics integration using Optimal Transport☆48Updated 4 months ago
- Single cell interactive plotting tools