krassowski / gsea-api
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
☆14Updated last year
Alternatives and similar repositories for gsea-api:
Users that are interested in gsea-api are comparing it to the libraries listed below
- R package for metabolic enzyme enrichment anaylsis☆12Updated 4 months ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆17Updated last year
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Summary statistics for repertoires☆16Updated 2 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 8 months ago
- Fit generalized linear models in python.☆27Updated 2 years ago
- ☆16Updated 2 months ago
- ☆42Updated 4 months ago
- High-definition modeling of chromatin + transcriptomics data☆22Updated this week
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆45Updated 3 weeks ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆17Updated last week
- ☆26Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Perturb-seq analysis package☆14Updated 10 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- Multi-omics factor analysis v2☆43Updated 5 months ago
- A GenePattern module for running the ssGSEA method☆13Updated 2 weeks ago
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆19Updated 3 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 4 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆20Updated last week
- Infer selection pressures on features of amino acid CDR3 sequences.☆24Updated 11 months ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆14Updated 3 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆56Updated 11 months ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆57Updated last year