tjd2002 / tjd-shared-codeLinks
Neuroscience/electrophsyiology data analysis tools (mostly Matlab)
☆14Updated 6 years ago
Alternatives and similar repositories for tjd-shared-code
Users that are interested in tjd-shared-code are comparing it to the libraries listed below
Sorting:
- ☆24Updated 5 years ago
- Revealing neural correlates of behavior without behavioral measurements☆15Updated 6 years ago
- Code for Functional Mixed Models for Fiber Photometry☆13Updated 4 months ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆46Updated 6 years ago
- ☆56Updated 9 months ago
- Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IB…☆54Updated 2 years ago
- ☆18Updated this week
- "Approaches to Study Neural Circuits" course☆65Updated last year
- Tools to work with Allen Inst CCF data in matlab☆143Updated 5 months ago
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- MATLAB toolbox for spike-train community detection☆15Updated last year
- ☆52Updated last year
- Histology processing☆71Updated last week
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 8 months ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆32Updated last year
- pynapple collaborative data analysis (high level python scripts)☆38Updated 3 weeks ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Bayesian learning and inference for state space models☆14Updated 4 years ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆73Updated last week
- Code for internal lab sharing - polishing has started but is by no means complete☆131Updated 2 years ago
- Gallery of visualizations and analyses of the Allen Brain Observatory☆25Updated 3 years ago
- A dimensionality reduction framework for disentangling the flow of signals between populations of neurons☆32Updated 4 months ago
- Registration of cells across sessions.☆75Updated last year
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆138Updated 2 weeks ago
- Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…☆18Updated 6 years ago
- Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and thet…☆23Updated 3 years ago
- Metrics for spike sorting validation/quality control☆15Updated 4 years ago
- Calcium imaging inter-session alignment☆15Updated last week
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago