cbib / DeepSpotLinks
DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images
☆16Updated 4 years ago
Alternatives and similar repositories for DeepSpot
Users that are interested in DeepSpot are comparing it to the libraries listed below
Sorting:
- Accurate and efficient spot detection for microscopy data☆113Updated 3 weeks ago
- ☆91Updated last month
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Deconvolution of widefield microscopy images and generation of point spread functions☆56Updated last month
- ☆12Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆110Updated this week
- Multiple file format reading directly into napari using pure Python☆39Updated 2 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆160Updated 4 months ago
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- ☆36Updated last year
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last week
- Toolbox for the analysis of smFISH images.☆70Updated 2 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆83Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 3 weeks ago
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- StarDist plugin for napari☆38Updated last year
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- The 2025 version of cellPLATO☆15Updated 2 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- ☆51Updated 7 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- Interactive visualization and sharing of cell tracking data in the browser☆44Updated last week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆99Updated this week
- ☆13Updated last month
- Commands and Classes for interfacing between Imaris and Fiji☆13Updated last year
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆75Updated last week
- A relabeling tool for tiled segmentation with Dask☆17Updated last year
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆48Updated 2 weeks ago
- ☆20Updated 2 months ago