cbib / DeepSpot
DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images
☆14Updated 3 years ago
Alternatives and similar repositories for DeepSpot:
Users that are interested in DeepSpot are comparing it to the libraries listed below
- Interactive visualization and sharing of cell tracking data in the browser☆23Updated this week
- Browse your OMERO database from within napari.☆36Updated last week
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Multiple file format reading directly into napari using pure Python☆35Updated 8 months ago
- ☆12Updated 10 months ago
- ☆68Updated 3 months ago
- Accurate and efficient spot detection for microscopy data☆72Updated 2 weeks ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 4 months ago
- ☆47Updated 5 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- StarDist plugin for napari☆37Updated 6 months ago
- Lectures for a napari training course☆50Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 4 months ago
- Automated mitochondrial segmentation and tracking.☆31Updated 3 years ago
- ☆15Updated 7 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- ☆16Updated last month
- A Board Game to teach co-localization analysis☆12Updated 4 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 5 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆13Updated last week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆36Updated 3 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆67Updated last week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 4 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 9 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last week