cbib / DeepSpotLinks
DeepSpot is a deep learning method for the enhancement of mRNA fluorescent spots in microscopy images
☆14Updated 3 years ago
Alternatives and similar repositories for DeepSpot
Users that are interested in DeepSpot are comparing it to the libraries listed below
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- Accurate and efficient spot detection for microscopy data☆92Updated last week
- Deconvolution of widefield microscopy images and generation of point spread functions☆49Updated 3 weeks ago
- ☆12Updated last year
- ☆86Updated 4 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆146Updated 5 months ago
- ☆16Updated last year
- ☆31Updated last year
- ☆51Updated 3 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆96Updated last month
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆66Updated last week
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 7 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆81Updated last month
- Toolbox for the analysis of smFISH images.☆68Updated last year
- The 2023 version of cellPLATO☆15Updated 2 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 3 months ago
- StarDist plugin for napari☆40Updated 11 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Lectures for a napari training course☆50Updated last year
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated 6 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆166Updated 3 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆30Updated 2 weeks ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- ImageJ plugins to run ilastik workflows☆25Updated 3 weeks ago
- ImageJ macros and scripts written at the imaging facility MRI☆35Updated this week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year