Alternatives and similar repositories for DeepSpot

Users that are interested in DeepSpot are comparing it to the libraries listed below

• maweigert / spotipy
  ☆12Updated last year
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆117Updated last week
• peng-lab / BaSiCPy
  ☆91Updated 3 months ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆162Updated last week
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆16Updated 3 years ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• tlambert03 / nd2
  Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
  ☆76Updated this week
• haesleinhuepf / devbio-napari
  ☆51Updated 9 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated 2 months ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆112Updated last month
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆73Updated 2 years ago
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆102Updated last week
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆40Updated last month
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆90Updated last week
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 4 months ago
• royerlab / inTRACKtive
  Interactive visualization and sharing of cell tracking data in the browser
  ☆45Updated last month
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated 3 months ago
• GuignardLab / tapenade
  ☆13Updated 2 months ago
• elgw / deconwolf
  Deconvolution of widefield microscopy images and generation of point spread functions
  ☆58Updated 3 weeks ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆84Updated 2 months ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆86Updated 3 weeks ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆135Updated 5 years ago
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆84Updated 2 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆70Updated last year
• ome / napari-omero
  Browse your OMERO database from within napari.
  ☆40Updated 3 weeks ago
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆30Updated 3 years ago
• AllenCellModeling / aicspylibczi
  Python module utilizing libCZI for reading Zeiss CZI files.
  ☆47Updated 9 months ago
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆11Updated 2 years ago