mkirsche / GrafterLinks
Scaffolding with Ultralong Reads
☆15Updated 4 years ago
Alternatives and similar repositories for Grafter
Users that are interested in Grafter are comparing it to the libraries listed below
Sorting:
- Improved Phased Assembler☆28Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 4 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- ☆25Updated 10 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Differential k-mer analysis☆36Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆28Updated 9 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28Updated 9 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆17Updated 2 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 weeks ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- SV calling for diploid assemblies☆28Updated last year
- Statistics and analysis for variation graphs☆41Updated 6 months ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- the pangenome graph evaluator☆27Updated 4 years ago