mcapuccini / MaReLinks
MaRe leverages the power of Docker and Spark to run and scale your serial tools in MapReduce fashion.
☆14Updated 3 years ago
Alternatives and similar repositories for MaRe
Users that are interested in MaRe are comparing it to the libraries listed below
Sorting:
- TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.☆12Updated 7 years ago
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆69Updated 3 years ago
- Heterogeneity-incorporating Workflow ApplicationMaster for YARN☆26Updated 7 years ago
- Bioinformatics for the Scala programming language☆112Updated 3 weeks ago
- Reproducing Distributed Systems and Experiments on Cloud☆39Updated 2 years ago
- TileDB☆79Updated 2 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 9 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Updated 8 years ago
- Conformal Prediction in Scala☆16Updated 4 years ago
- BigDataScript: Scirpting language for big data☆92Updated 4 years ago
- ☆15Updated 5 months ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Updated 9 years ago
- Miscellaneous functionality for manipulating Apache Spark RDDs.☆22Updated 6 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆85Updated 7 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆40Updated 7 months ago
- Spark VCF data source implementation for Dataframes☆14Updated 3 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- Client for the Cromwell workflow engine☆17Updated last year
- Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API☆99Updated 7 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14Updated 9 years ago
- Deprecated☆100Updated 6 years ago
- Load genomic BAM files using Apache Spark☆21Updated 7 years ago
- New url: https://github.com/biointec/halvade☆19Updated 8 years ago
- Package to extend Airflow functionality with CWL v1.0 support☆12Updated 6 years ago
- Actor Based Co(mputing)ntainers☆30Updated 2 months ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 9 years ago
- Python library & CLI to create, view and edit PFB files☆12Updated last month
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 7 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Updated 10 years ago