Alternatives and similar repositories for Hadoop-BAM

Users that are interested in Hadoop-BAM are comparing it to the libraries listed below

• citiususc / SparkBWA
  SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…
  ☆69Updated 6 years ago
• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆126Updated 2 years ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆110Updated 2 years ago
• broadgsa / gatk-protected
  Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…
  ☆143Updated 7 years ago
• bigdatagenomics / avocado
  A Variant Caller, Distributed. Apache 2 licensed.
  ☆71Updated 6 years ago
• broadinstitute / gatk-protected
  Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead
  ☆32Updated 8 years ago
• nfergu / popstrat
  Population Stratification Analysis on Genomics Data Using Deep Learning
  ☆25Updated 9 years ago
• sequencing / isaac_variant_caller
  This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka
  ☆37Updated 8 years ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago
• broadgsa / gatk
  Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…
  ☆295Updated 7 years ago
• mourisl / Lighter
  Fast and memory-efficient sequencing error corrector
  ☆93Updated last year
• bigdatagenomics / bdg-formats
  Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
  ☆40Updated 8 months ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 7 months ago
• amplab / snap
  Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
  ☆295Updated last month
• opencb / opencga
  An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …
  ☆174Updated last week
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• counsyl / hgvs
  HGVS variant name parsing and generation
  ☆175Updated 2 years ago
• genome / gms
  The Genome Modeling System installer
  ☆78Updated 10 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• hammerlab / spark-bam
  Load genomic BAM files using Apache Spark
  ☆21Updated 7 years ago
• ddcap / halvade
  New url: https://github.com/biointec/halvade
  ☆19Updated 8 years ago
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆99Updated 5 months ago
• KHP-Informatics / ngseasy
  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
  ☆86Updated 8 years ago
• DaehwanKimLab / hisat
  Fast spliced aligner with low memory requirements
  ☆41Updated 10 years ago
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 4 years ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆128Updated 5 years ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆63Updated 2 weeks ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆48Updated 5 years ago
• bcbio / bcbio-nextgen-vm
  Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
  ☆67Updated 5 years ago