HadoopGenomics / Hadoop-BAM
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
☆69Updated last year
Related projects: ⓘ
- GenomicsDB☆111Updated last year
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 5 years ago
- New url: https://github.com/biointec/halvade☆19Updated 7 years ago
- A scalable genome browser. Apache 2 licensed.☆124Updated last year
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆38Updated 4 months ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 6 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆33Updated 7 years ago
- Java Bindings (JNI) for bwa☆19Updated 7 years ago
- High performance data storage for importing, querying and transforming variants.☆93Updated 2 weeks ago
- The Genome Modeling System installer☆78Updated 9 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆38Updated 7 years ago
- Fast and memory-efficient sequencing error corrector☆92Updated 4 months ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 3 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆287Updated last year
- Annotation of VCF variants with functional impact and from databases (executable+library)☆56Updated last week
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆124Updated 2 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 6 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆94Updated last year
- Browser for ExAC consortium data☆106Updated 2 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆96Updated 6 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆78Updated last year
- HGVS variant name parsing and generation☆171Updated last year
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆122Updated 4 years ago
- Benchmarking toolkit for variant calling☆47Updated 3 years ago
- ☆16Updated this week
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆295Updated 6 years ago
- DNAnexus platform client libraries☆90Updated last week
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year