Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
☆74Dec 2, 2022Updated 3 years ago
Alternatives and similar repositories for Hadoop-BAM
Users that are interested in Hadoop-BAM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆43Feb 13, 2026Updated 8 months ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Jan 5, 2017Updated 9 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆70Sep 5, 2019Updated 7 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆36May 6, 2026Updated 5 months ago
- A Variant Caller, Distributed. Apache 2 licensed.☆72Mar 11, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 li…☆1,060Mar 17, 2026Updated 7 months ago
- Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)☆16Sep 23, 2016Updated 10 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Nov 2, 2015Updated 10 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Mar 17, 2026Updated 7 months ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Apr 13, 2018Updated 8 years ago
- DEPRECATED Lightweight bioinformatics pipeline tools using iPython☆14Dec 11, 2015Updated 10 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 10 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Variant calling from sequence reads using cloud computing☆40Jan 14, 2014Updated 12 years ago
- ☆17Sep 24, 2013Updated 13 years ago
- Bioinformatics for the Scala programming language☆115Aug 24, 2025Updated last year
- Java SDK for the Common Workflow Language standards☆16Updated this week
- Load genomic BAM files using Apache Spark☆21Jun 17, 2018Updated 8 years ago
- Distributed ambiguous fragment assignment using eXpress and Spark.☆13Jan 13, 2016Updated 10 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Apr 26, 2017Updated 9 years ago
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 10 years ago
- ☆15Feb 25, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Java Bindings (JNI) for bwa☆22Dec 15, 2016Updated 9 years ago
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- Tornado server for tracking samples at NGI Stockholm☆12Oct 19, 2026Updated last week
- Parallel read alignment and variant calling using MapReduce☆18Feb 19, 2019Updated 7 years ago
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server☆20Jun 27, 2017Updated 9 years ago
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows☆14Jun 27, 2018Updated 8 years ago
- A VCF parser and variant record model in JavaScript.☆22Mar 4, 2017Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A scalable genome browser. Apache 2 licensed.☆127Dec 2, 2022Updated 3 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 4 years ago
- ☆13Jun 21, 2017Updated 9 years ago
- New url: https://github.com/biointec/halvade☆19Apr 19, 2017Updated 9 years ago
- Isaac Genome Alignment Software☆36Apr 7, 2015Updated 11 years ago
- VariantToolChest (VTC) is intended to be a powerful tool chest to analyze VCF files. I encourage anyone to contribute their tools and hel…☆25Apr 8, 2016Updated 10 years ago
- ☆14Dec 13, 2023Updated 2 years ago