HadoopGenomics / Hadoop-BAMLinks
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
☆70Updated 2 years ago
Alternatives and similar repositories for Hadoop-BAM
Users that are interested in Hadoop-BAM are comparing it to the libraries listed below
Sorting:
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- GenomicsDB☆111Updated 2 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 6 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆292Updated 2 months ago
- Models and APIs for Genomic data. RETIRED 2018-01-24☆218Updated 2 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Updated 7 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆294Updated 6 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …☆171Updated this week
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Updated 4 months ago
- The Genome Modeling System installer☆79Updated 10 years ago
- DNAnexus platform client libraries☆96Updated 3 weeks ago
- New url: https://github.com/biointec/halvade☆19Updated 8 years ago
- Fast and memory-efficient sequencing error corrector☆93Updated last year
- HGVS variant name parsing and generation☆175Updated 2 years ago
- High performance data storage for importing, querying and transforming variants.☆98Updated 2 months ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 4 months ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆40Updated 5 months ago
- machine learning for genomic variants☆145Updated 9 months ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆126Updated 3 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆127Updated 5 years ago
- a lightweight db framework for exploring genetic variation.☆323Updated 5 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 8 years ago