☆15Jan 16, 2018Updated 8 years ago
Alternatives and similar repositories for tomatula
Users that are interested in tomatula are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pandas-based Data Handler for VCF, BED, and SAM Files☆32Oct 22, 2021Updated 4 years ago
- ☆12Apr 8, 2021Updated 5 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- Genome-wide association studies identify genetic variations associated with a target disease or trait. Researchers and clinicians can use…☆11Apr 12, 2024Updated 2 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Apr 13, 2018Updated 8 years ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 7 months ago
- ☆12Feb 19, 2017Updated 9 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆33May 6, 2026Updated 2 months ago
- ☆15Apr 2, 2025Updated last year
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆37Jun 30, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Nov 18, 2022Updated 3 years ago
- Spark VCF data source implementation for Dataframes☆15Jul 15, 2022Updated 4 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- Lollipop-diagram to visualize genomic mutations☆20Sep 3, 2019Updated 6 years ago
- Code and models for Molecule-Morphology Contrastive Pretraining (MoCoP)☆13Apr 12, 2024Updated 2 years ago
- A project to survey the possibilities of a graph database Neo4j in building decision tree algorithms using stored procedures.☆10Nov 21, 2023Updated 2 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆32Jul 6, 2022Updated 4 years ago
- An R package for estimating library complexity☆13Sep 4, 2022Updated 3 years ago
- Breast cancer risk prediction using genotyped data☆12Oct 11, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This guidance creates a scalable environment in AWS to prepare genomic, clinical, mutation, expression and imaging data for large-scale a…☆25Jun 30, 2025Updated last year
- Sentieon DNAscope + Machine Learning Model☆12Mar 19, 2025Updated last year
- Provides syntax highlighting for Apptainer/Singularity definition files.☆10Dec 24, 2025Updated 6 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Mar 24, 2019Updated 7 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 5 years ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- program to estimate admixture coefficients from individual genotype or sequence data☆33Sep 23, 2024Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Globals Finder for MED9/MED17☆13Apr 28, 2026Updated 2 months ago
- MaRe leverages the power of Docker and Spark to run and scale your serial tools in MapReduce fashion.☆14Apr 12, 2022Updated 4 years ago
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- ☆27Dec 29, 2020Updated 5 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- Generic Interactive Variant Analysis browser☆29Apr 12, 2022Updated 4 years ago
- Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing☆11Jan 7, 2020Updated 6 years ago