WUR-AI / tomatulaLinks
☆15Updated 7 years ago
Alternatives and similar repositories for tomatula
Users that are interested in tomatula are comparing it to the libraries listed below
Sorting:
- A configurable de novo assembly pipeline☆28Updated 9 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Updated 8 years ago
- drunk on perbase pileups and lua expressions☆19Updated 3 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- NGS duplicate marking☆19Updated 4 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 6 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- ☆29Updated 4 years ago
- Easily run WDL workflows on GCP☆14Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Bioinformatics Open Source Sequence machine☆33Updated 2 years ago
- Deep learning-based structural variant filtering method☆39Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- SQL-like query language for the SAM/BAM file format☆29Updated last year
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Find Unique genomic Regions☆30Updated last week
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 7 years ago