☆15Jan 16, 2018Updated 8 years ago
Alternatives and similar repositories for tomatula
Users that are interested in tomatula are comparing it to the libraries listed below
Sorting:
- Pandas-based Data Handler for VCF, BED, and SAM Files☆32Oct 22, 2021Updated 4 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- ☆15Apr 2, 2025Updated 11 months ago
- ☆12Apr 8, 2021Updated 4 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated this week
- A command line program for large scale buffering between piped programs☆16Nov 19, 2021Updated 4 years ago
- Spark VCF data source implementation for Dataframes☆15Jul 15, 2022Updated 3 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- MaRe leverages the power of Docker and Spark to run and scale your serial tools in MapReduce fashion.☆14Apr 12, 2022Updated 3 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- NGS duplicate marking☆19Apr 6, 2021Updated 4 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Mar 24, 2019Updated 6 years ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆19Feb 28, 2022Updated 4 years ago
- PRS-on-SPARK☆18Feb 4, 2021Updated 5 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Apr 13, 2018Updated 7 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 6 months ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- Lollipop-diagram to visualize genomic mutations☆20Sep 3, 2019Updated 6 years ago
- Benchmarking toolkit for variant calling☆48Oct 13, 2020Updated 5 years ago
- ☆26Dec 29, 2020Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Feb 10, 2026Updated 3 weeks ago
- Tumor Mutational Burden☆65Feb 17, 2026Updated 2 weeks ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆32Jan 22, 2016Updated 10 years ago
- ☆10Jan 26, 2026Updated last month
- Arioc: GPU-accelerated DNA short-read alignment☆70May 20, 2025Updated 9 months ago
- Generic Interactive Variant Analysis browser☆29Apr 12, 2022Updated 3 years ago
- program to estimate admixture coefficients from individual genotype or sequence data☆33Sep 23, 2024Updated last year
- GPU accelerated GWAS framework based on TensorFlow☆33Jul 6, 2023Updated 2 years ago
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆37Jun 30, 2021Updated 4 years ago
- fast easy interval overlapping for nim-lang☆29Jul 9, 2025Updated 7 months ago
- machine learning for genomic variants☆147Feb 23, 2026Updated last week
- A project to survey the possibilities of a graph database Neo4j in building decision tree algorithms using stored procedures.☆10Nov 21, 2023Updated 2 years ago
- Ressources for Boinformatics Trainings☆12Nov 20, 2023Updated 2 years ago
- Course material for CB2030☆13Feb 18, 2026Updated last week
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Jul 6, 2022Updated 3 years ago
- ☆10Dec 29, 2021Updated 4 years ago
- ☆13Mar 7, 2025Updated 11 months ago