indraniel / fqgrep
An approximate sequence pattern matcher for FASTQ/FASTA files.
☆30Updated 9 years ago
Alternatives and similar repositories for fqgrep:
Users that are interested in fqgrep are comparing it to the libraries listed below
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Code for nanopore paper☆33Updated 9 years ago
- ☆14Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- LoFreq Version 3☆27Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- ☆19Updated 8 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- De novo assembly of nanopore reads using nextflow☆20Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 7 years ago
- CRyPTIC data processing pipelines☆32Updated 8 months ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- Analysis tool for Nanopore sequencing data☆33Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 6 months ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆35Updated 14 years ago