An approximate sequence pattern matcher for FASTQ/FASTA files.
☆32Jan 22, 2016Updated 10 years ago
Alternatives and similar repositories for fqgrep
Users that are interested in fqgrep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago
- Mostly useful scripts and files for processing MiSeq amplicon data☆18Jul 1, 2016Updated 9 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 3 years ago
- Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.☆66Sep 30, 2022Updated 3 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆33May 1, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 8 years ago
- creating hybrid-gene phylogenetic trees for diversity analyses☆30Aug 23, 2022Updated 3 years ago
- Customer workshop materials☆19Apr 16, 2026Updated 2 weeks ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- Miniature LIMS and workflow manager for bioinformatics☆41Aug 17, 2011Updated 14 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 8 months ago
- A web wrapper for GeneValidator☆11Feb 12, 2021Updated 5 years ago
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 9 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- ☆14Feb 6, 2020Updated 6 years ago
- ☆16May 21, 2017Updated 8 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 6 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 6 years ago
- python stuff I use☆20Feb 16, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project r…☆150Oct 27, 2021Updated 4 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33May 29, 2024Updated last year
- Create NNN primers tiling codons of a gene for codon mutagenesis☆14Jan 13, 2021Updated 5 years ago
- Educational implementation of BWT and FM-index☆57Sep 28, 2018Updated 7 years ago
- Visualise interstrain recombination from environmental samples.☆27Apr 18, 2019Updated 7 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 6 months ago
- Maximum likelihood demultiplexing☆52Feb 14, 2025Updated last year
- Build and Deliver Software with Containers☆32Oct 2, 2020Updated 5 years ago
- The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute☆32Mar 19, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆11Nov 22, 2024Updated last year
- Species richness with high diversity☆68Apr 20, 2026Updated 2 weeks ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Mar 9, 2026Updated last month
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆13Mar 1, 2012Updated 14 years ago
- Gene orthologs for model organisms in a tidy data format☆15Sep 29, 2022Updated 3 years ago