An approximate sequence pattern matcher for FASTQ/FASTA files.
☆32Jan 22, 2016Updated 10 years ago
Alternatives and similar repositories for fqgrep
Users that are interested in fqgrep are comparing it to the libraries listed below
Sorting:
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 6 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Mar 31, 2015Updated 10 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.☆65Sep 30, 2022Updated 3 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32May 1, 2025Updated 10 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33May 29, 2024Updated last year
- simple and not slow ORF caller☆21Nov 6, 2025Updated 3 months ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 3 years ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 8 years ago
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated 2 months ago
- ☆64Dec 9, 2020Updated 5 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 6 years ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆25Feb 20, 2026Updated last week
- Python CLI for alignment-free genomics.☆13Feb 11, 2026Updated 3 weeks ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jan 5, 2026Updated last month
- A web wrapper for GeneValidator☆11Feb 12, 2021Updated 5 years ago
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆13Mar 1, 2012Updated 14 years ago
- ☆11Nov 22, 2024Updated last year
- Maximum likelihood demultiplexing☆51Feb 14, 2025Updated last year
- The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute☆32Mar 19, 2021Updated 4 years ago
- ☆25Feb 21, 2017Updated 9 years ago
- Species richness with high diversity☆68Aug 5, 2025Updated 6 months ago
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 9 years ago
- SeqMonk NGS visualisation and analysis tool☆51Nov 10, 2025Updated 3 months ago
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 5 months ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- Smart VCF parser DSL☆83May 24, 2022Updated 3 years ago
- Visualise interstrain recombination from environmental samples.☆26Apr 18, 2019Updated 6 years ago
- diversity estimation under ecological networks☆83Jul 29, 2025Updated 7 months ago
- Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project r…☆150Oct 27, 2021Updated 4 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated this week