Alternatives and similar repositories for starfish

Users that are interested in starfish are comparing it to the libraries listed below

• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• sigven / vcf2tsvpy
  Genomic VCF to tab-separated values
  ☆47Updated 2 years ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆28Updated last month
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆14Updated last year
• nf-core / deepvariant
  Please consider using/contributing to https://github.com/nf-core/sarek
  ☆41Updated 4 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆35Updated 8 years ago
• SexChrLab / XYalign
  ☆29Updated 6 years ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 4 months ago
• pachterlab / fastQpick
  ☆27Updated 8 months ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 5 years ago
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆31Updated 3 weeks ago
• HurlesGroupSanger / indelible
  Structural Variation breakpoint discovery via adaptive learning
  ☆16Updated 2 years ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated last week
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 3 years ago
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆34Updated last year
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 5 years ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 10 months ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 4 months ago
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆26Updated 6 months ago
• hellosunking / Ktrim
  Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
  ☆31Updated last month
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 3 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 8 months ago
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 7 years ago
• goeckslab / isoseq-browser
  ☆13Updated 8 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago