Intersect multiple VCF files with haplotype awareness
☆26Mar 14, 2021Updated 5 years ago
Alternatives and similar repositories for starfish
Users that are interested in starfish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated 2 months ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆12Feb 16, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- Structural Variant Prediction Viewer☆36Jul 19, 2017Updated 9 years ago
- ☆16Aug 14, 2020Updated 6 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆18Jul 21, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- ☆55Jun 24, 2020Updated 6 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆89Apr 1, 2019Updated 7 years ago
- Copy number estimation of highly duplicated sequences☆12Aug 15, 2017Updated 9 years ago
- Haplotype phaser for next-generation sequencing data☆14Jan 13, 2022Updated 4 years ago
- ☆10Oct 21, 2019Updated 7 years ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 6 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A method to locate variation clusters☆11Nov 27, 2025Updated 11 months ago
- genetic variant expressions, annotation, and filtering for great good.☆274May 12, 2026Updated 5 months ago
- ☆11Apr 25, 2024Updated 2 years ago
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal☆11Sep 7, 2022Updated 4 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 10 months ago
- Material for the lecture Statistical Computing☆13Sep 5, 2026Updated last month
- ☆20Nov 30, 2023Updated 2 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆134Jan 27, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 11 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated last year
- ☆13May 2, 2018Updated 8 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 7 months ago
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated 2 years ago
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- Bayesian haplotype-based mutation calling☆326Feb 13, 2026Updated 8 months ago