dancooke / starfish
Intersect multiple VCF files with haplotype awareness
☆25Updated 3 years ago
Alternatives and similar repositories for starfish:
Users that are interested in starfish are comparing it to the libraries listed below
- ☆23Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- Mapped QC analysis program☆43Updated 6 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- (WIP) best-practices workflow for rare disease☆60Updated 7 months ago
- Structural Variant Prediction Viewer☆33Updated 7 years ago
- Structural variant (SV) analysis tools☆35Updated 7 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Generic human DNA variant annotation pipeline☆57Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated 2 weeks ago
- Automated Detection and Qualification of Differential Methylation☆11Updated last year
- for visual evaluation of read support for structural variation☆51Updated 8 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 9 months ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- visual analysis of your VCF files☆31Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last week
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 5 months ago
- TIDDIT - structural variant calling☆73Updated 3 weeks ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆20Updated this week