Alternatives and similar repositories for pb-human-wgs-workflow-wdl

Users that are interested in pb-human-wgs-workflow-wdl are comparing it to the libraries listed below

• broadinstitute / gnomad-mitochondria
  ☆15Updated last year
• mcfrith / dnarrange
  ☆16Updated 9 months ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 3 years ago
• collaborativebioinformatics / STRdust
  ☆13Updated 3 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 8 months ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆14Updated last year
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆26Updated 6 months ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 3 years ago
• HurlesGroupSanger / indelible
  Structural Variation breakpoint discovery via adaptive learning
  ☆16Updated 2 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated 2 months ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• dermasugita / Viola-SV
  Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
  ☆26Updated last year
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 8 months ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆39Updated last year
• unique379r / strspy
  STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…
  ☆19Updated 2 months ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆33Updated 2 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• gymreklab / STRDenovoTools
  Toolkit for calling and analyzing de novo STR mutations
  ☆17Updated last year
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated last year
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆33Updated 2 years ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆23Updated 10 years ago
• RausellLab / CNVxplorer
  A webtool for the clinical interpretation of CNVs in rare disease patients
  ☆12Updated 3 years ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆25Updated 9 years ago
• Mangul-Lab-USC / benchmarking_SV
  Updated figures for "A benchmarking of WGS-based structural variant callers" paper
  ☆27Updated 3 years ago
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• UCSC-nanopore-cgl / margin
  ☆33Updated 3 years ago
• ccbiolab / svpluscnv
  Integrative analysis of complex structural variants
  ☆22Updated 5 years ago