apeltzer / CircularMapperLinks
A method to improve mappings on circular genomes, using the BWA mapper
☆10Updated 3 years ago
Alternatives and similar repositories for CircularMapper
Users that are interested in CircularMapper are comparing it to the libraries listed below
Sorting:
- ☆15Updated 7 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆46Updated 6 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 3 weeks ago
- The Zavolab Automated RNA-seq Pipeline☆36Updated last week
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 5 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- (formerly eelpond) an automated RNA-Seq workflow system☆27Updated 5 years ago
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- Genomic data interpretation and visualization Workshop☆21Updated 2 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 6 years ago
- Evolutionary Transcriptomics with R☆47Updated this week
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆57Updated 2 years ago
- Listing of GPU based bioinformatics software & sites & publications☆11Updated 4 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31Updated last year
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Fast sequencing data quality metrics☆31Updated 4 months ago