A method to improve mappings on circular genomes, using the BWA mapper
☆11Mar 4, 2022Updated 4 years ago
Alternatives and similar repositories for CircularMapper
Users that are interested in CircularMapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 4 years ago
- Nextflow training material for CRG PhD course 2019☆10Oct 23, 2019Updated 7 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆10Oct 2, 2025Updated last year
- This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data☆14Sep 21, 2026Updated last month
- ☆16Jun 30, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Computational pipelines for processing of paired-end Illumina reads☆11Dec 11, 2023Updated 2 years ago
- Tutorials for data science and bioinformatics☆13May 3, 2024Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- Workflow for preprocessing cfDNA samples.☆14Nov 11, 2024Updated last year
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆31Jul 3, 2025Updated last year
- Code repository for the HAYSTAC pipeline☆18Oct 25, 2024Updated 2 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆20Jun 26, 2022Updated 4 years ago
- R code implementing QTL mapping of physiological, behavioral and gene expression phenotypes in Carworth Farms White (CFW) outbred mice.☆10Aug 24, 2017Updated 9 years ago
- Inferring admixture proportions from NGS data☆13Oct 15, 2026Updated 2 weeks ago
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated last year
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆48Sep 8, 2025Updated last year
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆28Oct 15, 2026Updated 2 weeks ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆17Oct 22, 2026Updated last week
- ☆12Aug 17, 2024Updated 2 years ago
- Daren's RADseq pipeline. Currently in development.☆11Sep 1, 2017Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆11Jan 4, 2025Updated last year
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆20Jul 15, 2026Updated 3 months ago
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- ☆19Nov 7, 2025Updated 11 months ago
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆14Sep 4, 2024Updated 2 years ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆213Updated this week
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆52Jul 14, 2025Updated last year
- Python Programming for Biologists☆13Dec 3, 2025Updated 10 months ago
- ☆13Mar 15, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- microntology: a lightweight, data-driven controlled vocabulary to describe Earth's microbial habitats.☆12Oct 14, 2026Updated 2 weeks ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Mar 9, 2020Updated 6 years ago
- ☆14Apr 25, 2026Updated 6 months ago
- 先進ゲノム支援中級者講習会2019☆10Oct 11, 2019Updated 7 years ago
- This software is made to take in graph node based family pedigree and simulate genetic information onto that pedigree via SLiM.☆13Aug 20, 2026Updated 2 months ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆11Jul 11, 2025Updated last year