common-workflow-lab / wdl-cwl-translator

Related projects ⓘ

Alternatives and complementary repositories for wdl-cwl-translator

• common-workflow-language / cwl-utils
  Python utilities for CWL
  ☆36Updated this week
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆33Updated 4 months ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 3 years ago
• inab / WfExS-backend
  Workflow Execution Service Backend
  ☆17Updated 3 weeks ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆69Updated this week
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆37Updated last year
• inutano / cwl-metrics
  Accumulating container resource usage with workflow metadata
  ☆19Updated 3 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆41Updated last year
• nmdp-bioinformatics / flow
  Consensus assembly and variant calling workflow.
  ☆12Updated 9 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆25Updated 3 months ago
• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆27Updated 2 weeks ago
• snakemake / snakeface
  The snakemake interface, currently works like a notebook (under development)
  ☆18Updated 2 years ago
• nextflow-io / nf-prov
  ☆26Updated 2 weeks ago
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 6 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆28Updated 3 months ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆23Updated 10 months ago
• ncbi / JUDI
  This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…
  ☆33Updated 2 years ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆48Updated 6 months ago
• galaxyproject / iwc
  Galaxy Workflows maintained by the Intergalactic Workflow Commission
  ☆30Updated this week
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆53Updated last year
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 5 years ago
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 4 years ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆20Updated last week
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆24Updated 6 years ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆53Updated 2 years ago