common-workflow-lab / wdl-cwl-translatorLinks
A translator from WDL to CWL v1.2
☆27Updated last week
Alternatives and similar repositories for wdl-cwl-translator
Users that are interested in wdl-cwl-translator are comparing it to the libraries listed below
Sorting:
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- The snakemake interface, currently works like a notebook (under development)☆18Updated 3 years ago
- Build and maintain multiple custom conda environments all in one place.☆38Updated 6 months ago
- A python package for showing JBrowse views☆25Updated last year
- Nextflow language support for Visual Studio Editor☆34Updated this week
- Python utilities for CWL☆39Updated last week
- deploy a snakemake pipeline directly from version control (under development)☆24Updated 2 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Workflow Execution Service Backend☆18Updated this week
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 7 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- ☆13Updated 7 years ago
- WDL plugin for pytest☆48Updated last year
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated last week
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Access nextflow variables from python scripts or notebooks☆21Updated 4 years ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆34Updated 3 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- Class materials for the NIH HPC snakemake class☆16Updated 8 months ago
- Test data for MultiQC.☆22Updated last week
- A Github action for running a Snakemake workflow☆58Updated last month
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- WDL tools for parsing, type-checking, and more☆25Updated last month
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago