common-workflow-lab / wdl-cwl-translator
A translator from WDL to CWL v1.2
☆26Updated 2 weeks ago
Alternatives and similar repositories for wdl-cwl-translator:
Users that are interested in wdl-cwl-translator are comparing it to the libraries listed below
- The snakemake interface, currently works like a notebook (under development)☆18Updated 3 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Workflow Execution Service Backend☆18Updated this week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆42Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- Python utilities for CWL☆39Updated this week
- WDL plugin for pytest☆48Updated last year
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 7 months ago
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆9Updated this week
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Seven Bridges Python library for programatic generation of CWL workflows.☆20Updated 2 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 2 months ago
- Nextflow language support for Visual Studio Editor☆34Updated last week
- a minimal, scriptable genome browser for python☆49Updated 2 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Docker image of JBrowse Genome Browser☆14Updated 3 years ago
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Updated last year
- A python package for showing JBrowse views☆23Updated last year
- ☆13Updated 7 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- An easy-to-use way for running Galaxy workflows.☆20Updated 5 years ago
- Bio-dockers: dockerized bioinformatic tools☆32Updated last month
- ☆21Updated last year
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 3 months ago
- X things you should take into consideration if you code for big data analysis☆23Updated 6 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Build and maintain multiple custom conda environments all in one place.☆37Updated 2 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago