UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
☆28Sep 1, 2026Updated 3 weeks ago
Alternatives and similar repositories for gwas
Users that are interested in gwas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11Sep 11, 2026Updated last week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆95Sep 8, 2026Updated 2 weeks ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆44Jul 28, 2026Updated last month
- A pipeline to investigate horizontal gene transfer from NGS data☆27Sep 11, 2026Updated last week
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Feb 23, 2026Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Protein 3D structure prediction pipeline☆115Sep 11, 2026Updated last week
- gatk4 RNA variant calling pipeline☆61Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆69Sep 16, 2026Updated last week
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆26Jul 28, 2026Updated last month
- ATAC-seq peak-calling and QC analysis pipeline☆230Sep 11, 2026Updated last week
- CRAN Task View: High-Performance and Parallel Computing with R☆29May 6, 2026Updated 4 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆245Sep 11, 2026Updated last week
- k-mer similarity analysis pipeline☆24Sep 1, 2026Updated 3 weeks ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆25Jul 28, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A nextflow pipeline for calling CNVs in probe-enriched sequencing workflows☆14Aug 17, 2026Updated last month
- ABC of chemoinformatics☆20Aug 3, 2018Updated 8 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆21Jul 13, 2020Updated 6 years ago
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 9 months ago
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆14Oct 19, 2022Updated 3 years ago
- A GitHub action to install Nextflow☆31Aug 20, 2026Updated last month
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Sep 1, 2026Updated 3 weeks ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆34Updated this week
- Docker containers for bioinformatics with a small footprint☆23May 25, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Surveillance of pathogens using population genomics and sequencing☆62Sep 3, 2026Updated 2 weeks ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆36Sep 11, 2026Updated last week
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 3 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆35May 6, 2026Updated 4 months ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated 2 weeks ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations☆15Mar 6, 2018Updated 8 years ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆109Sep 1, 2026Updated 3 weeks ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Jul 28, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A small-RNA sequencing analysis pipeline☆101Updated this week
- Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.☆36Updated this week
- snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.☆20Jan 19, 2024Updated 2 years ago
- Distant Reader, a tool for using & understanding a corpus☆20Jan 10, 2023Updated 3 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- MGKit: Metagenomics Framework☆15Oct 31, 2022Updated 3 years ago
- Workflows made easy.☆12Mar 23, 2018Updated 8 years ago