nf-core / gwasLinks
UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
☆26Updated 2 months ago
Alternatives and similar repositories for gwas
Users that are interested in gwas are comparing it to the libraries listed below
Sorting:
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 5 months ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆34Updated last week
- ☆18Updated 6 years ago
- Interactive phylogenetic tree viewer/editor☆47Updated 2 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated 2 weeks ago
- Master of Pores 2☆23Updated 8 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- gatk4 RNA variant calling pipeline☆51Updated last month
- WDL workflows for variant calling and assembly using ONT☆35Updated last week
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆23Updated 2 months ago
- Structural variant merging tool☆53Updated 11 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆35Updated last month
- ☆27Updated 6 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Notes on SNP-related tools and genome variation analysis☆28Updated 2 weeks ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 10 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- ☆49Updated 9 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- visual analysis of your VCF files☆36Updated 2 years ago
- course about NGS data processing: genomics and transcriptomics☆33Updated 4 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆32Updated 2 years ago
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago