UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
☆27Apr 30, 2026Updated last month
Alternatives and similar repositories for gwas
Users that are interested in gwas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated 2 years ago
- Protein 3D structure prediction pipeline☆105Updated this week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆94Updated this week
- gatk4 RNA variant calling pipeline☆61Jun 3, 2026Updated last week
- A pipeline to investigate horizontal gene transfer from NGS data☆27Apr 30, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Feb 23, 2026Updated 3 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆37May 9, 2024Updated 2 years ago
- A nextflow pipeline for calling exome CNVs☆14May 28, 2026Updated 2 weeks ago
- A GitHub action to install Nextflow☆29Updated this week
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆24Jan 15, 2026Updated 4 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆241May 27, 2026Updated 2 weeks ago
- ATAC-seq peak-calling and QC analysis pipeline☆226May 26, 2026Updated 2 weeks ago
- k-mer similarity analysis pipeline☆23Apr 30, 2026Updated last month
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆25Jun 26, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆20Jul 13, 2020Updated 5 years ago
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 6 months ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13May 20, 2026Updated 3 weeks ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Apr 30, 2026Updated last month
- Docker containers for bioinformatics with a small footprint☆23May 25, 2026Updated 2 weeks ago
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆26Feb 23, 2026Updated 3 months ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆32Updated this week
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Apr 17, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆33May 6, 2026Updated last month
- Compare the quality of multiple genomes, along with their annotations.☆20May 7, 2026Updated last month
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- A small-RNA sequencing analysis pipeline☆100Jun 3, 2026Updated last week
- snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.☆20Jan 19, 2024Updated 2 years ago
- Surveillance of pathogens using population genomics and sequencing☆60Apr 30, 2026Updated last month
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆107Apr 30, 2026Updated last month
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated last year
- An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations☆14Mar 6, 2018Updated 8 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆50May 21, 2026Updated 3 weeks ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.☆34May 29, 2026Updated 2 weeks ago
- MGKit: Metagenomics Framework☆15Oct 31, 2022Updated 3 years ago
- blupADC:An useful tool for animal and plant breeding☆32Nov 22, 2024Updated last year
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 7 months ago
- Motif manipulation functions for R.☆33Updated this week