A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that cite them
☆13Oct 19, 2018Updated 7 years ago
Alternatives and similar repositories for Science-Citation-Knowledge-Extractor
Users that are interested in Science-Citation-Knowledge-Extractor are comparing it to the libraries listed below
Sorting:
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- Variant to disease dataset workflows for Open Targets Genetics☆13Aug 23, 2022Updated 3 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Package for pairwise operations in {dplyr}.☆13Jul 1, 2022Updated 3 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated last month
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- Workflow Execution Service Backend☆20Feb 23, 2026Updated last week
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- This is a virtual environment which contains databases, software, workflows, and workshops for Precision Health Data Analysis.☆23Mar 31, 2023Updated 2 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Oct 4, 2024Updated last year
- iread☆25Jul 16, 2021Updated 4 years ago
- Variant catalogue pipeline☆26Jan 30, 2026Updated last month
- Get literature information via PubMed ID, such as the author, title, journal_name, pub_date and so on.☆17Sep 11, 2016Updated 9 years ago
- CWL for GDC DNASeq workflows☆23Feb 6, 2026Updated 3 weeks ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Data portal API and component generation☆30Feb 23, 2026Updated last week
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Apr 9, 2021Updated 4 years ago
- Curated list of bioinformatics formats and publications☆54Mar 18, 2019Updated 6 years ago
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Jul 4, 2024Updated last year
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆27Jul 26, 2024Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 6 months ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 3 years ago
- Shiny App for comparison of samples and plotting effect size☆29Apr 9, 2024Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated last month
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated 10 months ago
- Securely annotate and store your PDF documents☆27Mar 12, 2021Updated 4 years ago
- visualize CNV data from targeted capture based sequencing data☆34May 10, 2021Updated 4 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Dec 16, 2025Updated 2 months ago
- Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents☆69Oct 20, 2022Updated 3 years ago
- Write PubMed search results with two display options (citation or listview) to PDF or Word☆13Oct 18, 2020Updated 5 years ago
- ☆29Feb 17, 2021Updated 5 years ago