MultiQC / MegaQCLinks
Web application to collect and visualise data across multiple MultiQC runs.
☆95Updated 9 months ago
Alternatives and similar repositories for MegaQC
Users that are interested in MegaQC are comparing it to the libraries listed below
Sorting:
- LoFreq Star: Sensitive variant calling from sequencing data☆107Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated last week
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated last month
- ☆123Updated 2 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆129Updated 2 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 5 months ago
- ☆95Updated 3 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- BigWig and BAM utilities☆97Updated last year
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 3 months ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- Structural Variant Index☆75Updated 9 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- Reference genome resource manager☆74Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- using all the bits for echt rapid variant annotation and filtering☆152Updated 6 months ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- TIDDIT - structural variant calling☆76Updated 5 months ago
- An awk-like VCF parser☆56Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 11 months ago
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- Experimental features for Nextflow☆45Updated last month