Web application to collect and visualise data across multiple MultiQC runs.
☆96Dec 13, 2024Updated last year
Alternatives and similar repositories for MegaQC
Users that are interested in MegaQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,492Updated this week
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Jun 25, 2019Updated 7 years ago
- Demonstrating best practices for bioinformatics command line tools☆24Jun 2, 2026Updated 3 months ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- ☆27Apr 17, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 3 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated last year
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆30Updated this week
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆21Aug 13, 2026Updated last month
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆57Jul 24, 2025Updated last year
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated 2 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆35May 6, 2026Updated 4 months ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Customer workshop materials☆19May 13, 2026Updated 4 months ago
- Nextflow Tower system☆154Jan 30, 2025Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Aug 24, 2026Updated 3 weeks ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆99Apr 9, 2023Updated 3 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆134Jan 27, 2020Updated 6 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 3 months ago
- VCF visualization interface☆181Updated this week
- nf-test utility functions☆13Updated this week
- Python interface to the GenoLogics LIMS server via its REST API.☆30Aug 13, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Mapped QC analysis program☆44May 16, 2018Updated 8 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆337May 27, 2025Updated last year
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆33Apr 10, 2026Updated 5 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 8 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 22, 2026Updated 2 months ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 9 months ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Aug 10, 2026Updated last month
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆877May 2, 2026Updated 4 months ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆26Updated this week
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago