Web application to collect and visualise data across multiple MultiQC runs.
☆95Dec 13, 2024Updated last year
Alternatives and similar repositories for MegaQC
Users that are interested in MegaQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,479Jun 29, 2026Updated 3 weeks ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Jun 25, 2019Updated 7 years ago
- Demonstrating best practices for bioinformatics command line tools☆24Jun 2, 2026Updated last month
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 3 months ago
- ☆27Apr 17, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated last month
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 10 months ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Nov 27, 2025Updated 7 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆55Jul 24, 2025Updated 11 months ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆33May 6, 2026Updated 2 months ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Customer workshop materials☆19May 13, 2026Updated 2 months ago
- Nextflow Tower system☆154Jan 30, 2025Updated last year
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆99Apr 9, 2023Updated 3 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆134Jan 27, 2020Updated 6 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- VCF visualization interface☆179Updated this week
- nf-test utility functions☆12May 22, 2026Updated last month
- Mapped QC analysis program☆44May 16, 2018Updated 8 years ago
- Python interface to the GenoLogics LIMS server via its REST API.☆30Aug 13, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆338May 27, 2025Updated last year
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆32Apr 10, 2026Updated 3 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 22, 2026Updated 3 weeks ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 7 months ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36May 29, 2026Updated last month
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆865May 2, 2026Updated 2 months ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆25Apr 1, 2026Updated 3 months ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆22May 9, 2026Updated 2 months ago