nextflow-io / nf-hack18
Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
☆18Updated 5 years ago
Alternatives and similar repositories for nf-hack18:
Users that are interested in nf-hack18 are comparing it to the libraries listed below
- ☆19Updated 8 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- ☆13Updated 7 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 9 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 8 months ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆14Updated 5 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 3 months ago
- Tools for generating and decoding error-correcting DNA barcodes☆16Updated 3 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 5 months ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 3 years ago
- ☆23Updated 5 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Adapters for trimming☆30Updated 6 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 6 months ago