nextflow-io / nf-hack18Links
Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
☆19Updated 6 years ago
Alternatives and similar repositories for nf-hack18
Users that are interested in nf-hack18 are comparing it to the libraries listed below
Sorting:
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Updated last month
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- sort genomic data☆36Updated last month
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- full taxonomer cython repository☆22Updated 6 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- ☆18Updated 8 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month