nextflow-io / nf-hack18Links
Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
☆18Updated 6 years ago
Alternatives and similar repositories for nf-hack18
Users that are interested in nf-hack18 are comparing it to the libraries listed below
Sorting:
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated 2 months ago
- Linter rules for Nextflow DSL scripts☆34Updated last month
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated 2 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 3 months ago
- ☆18Updated 8 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 9 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 8 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Fast sequencing data quality metrics☆27Updated last week