Bioinformatics pipeline used in the Laboratory of Viral Metagenomics (KU Leuven) to trim and assemble paired-end Illumina reads, and classify resulting contigs.
β11Nov 6, 2025Updated 11 months ago
Alternatives and similar repositories for ViPER
Users that are interested in ViPER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particlesβ13Mar 21, 2020Updated 6 years ago
- π¦ 𧬠Unraveling Viral Genomes from Metagenomesβ11Jul 30, 2026Updated 3 months ago
- The repository for the Viral Genomics and Bioinformatics 2022 courseβ11Jul 5, 2024Updated 2 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)β22May 3, 2025Updated last year
- Nanopore read de-multiplexerβ13Mar 25, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reconstruction and analysis of viral and host genomes at multi-organ levelβ21Apr 10, 2026Updated 6 months ago
- ARCHIVED: see viral-ngs repoβ10Jan 12, 2026Updated 9 months ago
- β35Oct 6, 2025Updated last year
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality euβ¦β26Oct 20, 2026Updated last week
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.β10Dec 20, 2021Updated 4 years ago
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAMβ28Feb 6, 2024Updated 2 years ago
- Supporting code for uncultivated gut virus manuscriptβ81Jul 17, 2023Updated 3 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job schedulerβ17Oct 9, 2026Updated 2 weeks ago
- Set of tools for viral metagenomics.β18Aug 17, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identifying misassemblies via deep learningβ11May 1, 2024Updated 2 years ago
- Vanjari is a tool for the classification of viruses using neural networksβ14Nov 21, 2025Updated 11 months ago
- β15May 22, 2025Updated last year
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinicalβ¦β45Nov 20, 2019Updated 6 years ago
- VirBot: a protein-based RNA virus detector for metagenomic dataβ35Jul 29, 2024Updated 2 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informatβ¦β19May 3, 2024Updated 2 years ago
- Pilea: profiling bacterial growth dynamics from metagenomes with sketchingβ13Oct 21, 2026Updated last week
- A viral haplotype reconstruction tool for long reads.β18Jun 3, 2026Updated 4 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysisβ41Sep 20, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing dataβ31Jan 15, 2026Updated 9 months ago
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.β42Oct 8, 2026Updated 3 weeks ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.β19Sep 12, 2021Updated 5 years ago
- β45Mar 13, 2026Updated 7 months ago
- Opinionated viral metagenomics workflowβ20Oct 8, 2026Updated 3 weeks ago
- Code for de novo discovery of viral families in virome dataβ16Jun 20, 2024Updated 2 years ago
- A tool to assemble high-quality phages from metagenomes.β28Sep 10, 2026Updated last month
- β25Sep 26, 2025Updated last year
- SARS-CoV-2 genome data analysisβ10Dec 6, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Automatically download publicly available animal disease reports from the World Organisation for Animal Health WAHIS database.β10Jun 6, 2023Updated 3 years ago
- Design tool for highly performant qPCR diagnostics.β12Updated this week
- Full-length de novo viral haplotype reconstruction from noisy long readsβ22Nov 6, 2023Updated 2 years ago
- β25Oct 5, 2026Updated 3 weeks ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.β25Feb 22, 2026Updated 8 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for virusesβ92Dec 27, 2024Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical dataβ60Updated this week