Bioinformatics pipeline used in the Laboratory of Viral Metagenomics (KU Leuven) to trim and assemble paired-end Illumina reads, and classify resulting contigs.
β11Nov 6, 2025Updated 10 months ago
Alternatives and similar repositories for ViPER
Users that are interested in ViPER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particlesβ13Mar 21, 2020Updated 6 years ago
- π¦ 𧬠Unraveling Viral Genomes from Metagenomesβ11Jul 30, 2026Updated last month
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)β22May 3, 2025Updated last year
- Nanopore read de-multiplexerβ13Mar 25, 2020Updated 6 years ago
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality euβ¦β26Updated this week
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Reconstruction and analysis of viral and host genomes at multi-organ levelβ21Apr 10, 2026Updated 5 months ago
- β35Oct 6, 2025Updated 11 months ago
- β15May 22, 2025Updated last year
- Set of tools for viral metagenomics.β17Aug 17, 2026Updated last month
- Supporting code for uncultivated gut virus manuscriptβ81Jul 17, 2023Updated 3 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job schedulerβ16Jul 1, 2024Updated 2 years ago
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAMβ28Feb 6, 2024Updated 2 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.β10Dec 20, 2021Updated 4 years ago
- VirBot: a protein-based RNA virus detector for metagenomic dataβ35Jul 29, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A containerized bioinformatics pipeline for viral metagenomic data analysisβ41Apr 9, 2026Updated 5 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informatβ¦β19May 3, 2024Updated 2 years ago
- Opinionated viral metagenomics workflowβ17Updated this week
- Code for de novo discovery of viral families in virome dataβ16Jun 20, 2024Updated 2 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.β19Sep 12, 2021Updated 5 years ago
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.β40Updated this week
- A wrapper to identify, bin, classify, and predict host-viral relationship for virusesβ92Dec 27, 2024Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical dataβ55Jul 21, 2026Updated last month
- MGY441 Bioinformatics: Virus Discovery Projectβ24Dec 22, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tools for analyzing and comparing SARS-CoV-2 phylogeniesβ10Nov 21, 2020Updated 5 years ago
- SARS-CoV-2 genome data analysisβ10Dec 6, 2025Updated 9 months ago
- A pipeline for viral identification from metagenomic samplesβ29Oct 15, 2017Updated 8 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiPβ21Jul 3, 2026Updated 2 months ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.β18Mar 16, 2026Updated 6 months ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.β19Feb 14, 2024Updated 2 years ago
- β27Jun 20, 2023Updated 3 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomesβ15Aug 7, 2024Updated 2 years ago
- β30Updated this week
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- β24May 13, 2024Updated 2 years ago
- Virus Identificationβ29May 26, 2025Updated last year
- Find and Download WorldPop rasters through QGISβ12Sep 5, 2025Updated last year
- Stata module to access World Bankβs Global Poverty and Inequality dataβ13Mar 31, 2026Updated 5 months ago
- β20Updated this week
- VirID: An integrated platform for the discovery and characterization of RNA Virusesβ26Jan 8, 2026Updated 8 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomiβ¦β43Aug 28, 2026Updated 3 weeks ago