Matthijnssenslab / ViPERLinks
Bioinformatics pipeline used in the Laboratory of Viral Metagenomics (KU Leuven) to trim and assemble paired-end Illumina reads, and classify resulting contigs.
☆8Updated 2 weeks ago
Alternatives and similar repositories for ViPER
Users that are interested in ViPER are comparing it to the libraries listed below
Sorting:
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆12Updated 5 years ago
- Prophage Activity Estimator☆26Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 6 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Updated 3 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆32Updated 10 months ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- ☆32Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆30Updated 2 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆28Updated 3 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆26Updated last week
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 8 months ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 8 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- viralFlye pipeline☆18Updated 10 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 2 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- ☆37Updated last year
- Intra-species bacterial contamination detection☆25Updated 4 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- ☆26Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated last year