FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.
☆13Feb 3, 2026Updated last month
Alternatives and similar repositories for FluMut
Users that are interested in FluMut are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- Influenza data pipeline to automate genotyping assignment☆41Mar 19, 2026Updated last week
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Jan 22, 2026Updated 2 months ago
- ☆11Jun 29, 2023Updated 2 years ago
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated 7 months ago
- VIGOR4☆21Aug 15, 2025Updated 7 months ago
- Surveillance of pathogens using population genomics and sequencing☆59Feb 13, 2026Updated last month
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.☆23Dec 19, 2025Updated 3 months ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Jan 6, 2023Updated 3 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 6 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆23Sep 12, 2024Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- Fast viral consensus genome reconstruction☆26Feb 5, 2026Updated last month
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 2 years ago
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆15Feb 19, 2026Updated last month
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated 10 months ago
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A protein language model for learning the SARS-CoV-2 fitness landscape☆12Apr 22, 2025Updated 11 months ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 2 years ago
- Simplii Financial API for Node.js☆13Nov 26, 2017Updated 8 years ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- OpenVPN server in docker that supports 2FA with password and Yubikey OTP and LDAP as backend☆15Dec 4, 2025Updated 3 months ago
- ☆30Mar 6, 2025Updated last year
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆20Feb 20, 2026Updated last month
- Variant call verification☆16May 12, 2025Updated 10 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated last month
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆12Sep 9, 2021Updated 4 years ago
- Reference-based consensus creation☆60Updated this week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆91Mar 10, 2026Updated 2 weeks ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 3 months ago