01life / ViromeFlowXLinks
☆10Updated 4 months ago
Alternatives and similar repositories for ViromeFlowX
Users that are interested in ViromeFlowX are comparing it to the libraries listed below
Sorting:
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆35Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆22Updated this week
- De novo VIral Genome Annotator☆23Updated last year
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- MAG Circularization Method☆32Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆19Updated 3 years ago
- ☆41Updated last year
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- Neptune: Genomic Signature Discovery☆20Updated 9 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- Dadaist2 🟨 Highway to R☆13Updated 6 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆18Updated 7 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Download assembly files from NCBI☆12Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Code for de novo discovery of viral families in virome data☆14Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- strain-level analysis tools☆38Updated 10 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- ☆27Updated 7 months ago