01life / ViromeFlowXLinks
☆10Updated 4 months ago
Alternatives and similar repositories for ViromeFlowX
Users that are interested in ViromeFlowX are comparing it to the libraries listed below
Sorting:
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆36Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- ☆41Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Pan-genome Analysis☆12Updated 5 months ago
- De novo VIral Genome Annotator☆23Updated last year
- Influenza genome analysis Nextflow workflow☆23Updated 3 weeks ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Integrative virome pipeline☆13Updated 11 months ago
- Nanopore Real-Time Analysis Tool☆15Updated last year
- MAG Circularization Method☆32Updated 3 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- Plot microbiome time series in parallel☆26Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 7 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 8 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 4 years ago
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆16Updated 3 weeks ago
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 6 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 2 months ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 10 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago