RSV-A lineage definitions and proposals
☆14Nov 9, 2025Updated 5 months ago
Alternatives and similar repositories for lineage-designation-A
Users that are interested in lineage-designation-A are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An awesome tool to visualize snakemake rule graphs☆32Apr 15, 2026Updated 2 weeks ago
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆13Oct 9, 2025Updated 6 months ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 2 years ago
- Generates Don't-Break-The-Chain calendars☆26Nov 27, 2022Updated 3 years ago
- Assembly of Nanopore Sequencing☆17Apr 14, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Workflow for viral analysis guided by reference☆18Apr 14, 2026Updated 2 weeks ago
- Umbrella documentation project for Nextstrain☆18Apr 23, 2026Updated last week
- Programmatically interact with the GISAID database.☆81Aug 5, 2025Updated 8 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated 2 months ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Mar 17, 2026Updated last month
- Viral (meta)-genome assembly pipeline.☆23Apr 3, 2026Updated last month
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 3 months ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 8 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Jul 2, 2024Updated last year
- Python Primer Design Library☆14Mar 27, 2026Updated last month
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆12Oct 5, 2025Updated 6 months ago
- ☆51Mar 11, 2022Updated 4 years ago
- Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification☆15Sep 27, 2023Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitution…☆11Mar 12, 2026Updated last month
- A selenium spider for GISAID☆10Apr 10, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆18Feb 17, 2026Updated 2 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 2 months ago
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 2 months ago
- ☆19Dec 11, 2024Updated last year
- ☆27Sep 24, 2020Updated 5 years ago
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆45Updated this week
- ☆14Oct 5, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- [DEPRECATED] Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Mar 26, 2026Updated last month
- Online configuration data for lnav☆11Nov 24, 2016Updated 9 years ago
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- Repository to propose and discuss lineages☆51Updated this week
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated last year