RSV-A lineage definitions and proposals
☆14Nov 9, 2025Updated 4 months ago
Alternatives and similar repositories for lineage-designation-A
Users that are interested in lineage-designation-A are comparing it to the libraries listed below
Sorting:
- An awesome tool to visualize snakemake rule graphs☆22Mar 12, 2026Updated last week
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆13Oct 9, 2025Updated 5 months ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 2 years ago
- Generates Don't-Break-The-Chain calendars☆26Nov 27, 2022Updated 3 years ago
- Assembly of Nanopore Sequencing☆17Jan 8, 2026Updated 2 months ago
- Workflow for viral analysis guided by reference☆18Feb 19, 2026Updated last month
- Umbrella documentation project for Nextstrain☆18Updated this week
- Programmatically interact with the GISAID database.☆80Aug 5, 2025Updated 7 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated last month
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Updated this week
- Viral (meta)-genome assembly pipeline.☆23Mar 6, 2026Updated 2 weeks ago
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated last month
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 7 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Jul 2, 2024Updated last year
- Python Primer Design Library☆14Nov 24, 2025Updated 3 months ago
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆12Oct 5, 2025Updated 5 months ago
- ☆50Mar 11, 2022Updated 4 years ago
- ☆18Dec 11, 2024Updated last year
- Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification☆15Sep 27, 2023Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitution…☆11Mar 12, 2026Updated last week
- A selenium spider for GISAID☆10Apr 10, 2023Updated 2 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated last year
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Feb 17, 2026Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated last month
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated last month
- ☆27Sep 24, 2020Updated 5 years ago
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆42Mar 16, 2026Updated last week
- ☆14Oct 5, 2023Updated 2 years ago
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Oct 8, 2024Updated last year
- ☆18Jan 14, 2024Updated 2 years ago
- Online configuration data for lnav☆11Nov 24, 2016Updated 9 years ago
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- Repository to propose and discuss lineages☆50Mar 14, 2026Updated last week