TheSEED / RASTtk-DistributionLinks
KBase distribution module for RASTtk.
☆13Updated 5 years ago
Alternatives and similar repositories for RASTtk-Distribution
Users that are interested in RASTtk-Distribution are comparing it to the libraries listed below
Sorting:
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- MAG Circularization Method☆32Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- A selection of short scripts for analyzing microbial genomes☆14Updated 7 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- strain-level analysis tools☆39Updated 11 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 8 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 10 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Discover and annotate the virome☆51Updated 3 weeks ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- ☆45Updated 2 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆39Updated last week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 9 months ago
- Strain Resolution ON Graphs☆47Updated 2 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 9 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- ☆41Updated last year
- Metagenomic binning suite☆29Updated 2 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆36Updated last year
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- ☆18Updated 4 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago