Alternatives and similar repositories for bpp-phyl:

Users that are interested in bpp-phyl are comparing it to the libraries listed below

• seqan / slimm
  Species Level Identification of Microbes from Metagenomes
  ☆28Updated 5 years ago
• benjaminhgood / LTEE-metagenomic
  Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli
  ☆23Updated 5 years ago
• seqan / lambda
  LAMBDA – the Local Aligner for Massive Biological DatA
  ☆77Updated 6 months ago
• Cibiv / NextGenMap
  NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…
  ☆87Updated 5 years ago
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆55Updated 3 years ago
• jstjohn / SimSeq
  An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…
  ☆66Updated 10 years ago
• cbg-ethz / shorah
  Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)
  ☆40Updated 2 years ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated last month
• MG-RAST / MG-RAST
  The MG-RAST Backend -- the API server
  ☆45Updated last year
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 5 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 2 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆69Updated 8 years ago
• stamatak / ExaML
  Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI
  ☆50Updated 4 years ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated 11 months ago
• jts / nanocorrect
  Experimental pipeline for correcting nanopore reads
  ☆39Updated 7 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 6 years ago
• mcfrith / last-rna
  ☆49Updated 2 years ago
• tseemann / VelvetOptimiser
  Automatically optimise three of Velvet's assembly parameters.
  ☆47Updated 2 years ago
• bcgsc / biobloom
  Create Bloom filters for a given reference and then use it to categorize sequences
  ☆76Updated 3 months ago
• VertebrateResequencing / vr-codebase
  The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute
  ☆31Updated 3 years ago
• evolbioinfo / booster
  ☆27Updated 4 years ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• GATB / simka
  Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
  ☆47Updated 3 years ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆74Updated 8 years ago
• jgurtowski / nanocorr
  Error correction for Oxford Nanopore data
  ☆47Updated 3 years ago
• MGI-tech-bioinformatics / SARS-CoV-2_Multi-PCR_v1.0
  SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data
  ☆20Updated 3 years ago
• jgurtowski / ectools
  tools for error correction and working with long read data
  ☆44Updated 10 years ago
• mjsull / Contiguity
  Tool for visualising assemblies.
  ☆17Updated 9 years ago
• iqbal-lab-org / gramtools
  Genome inference from a population reference graph
  ☆95Updated 2 years ago
• nathanweeks / exonerate
  A fork of exonerate: a generic tool for sequence alignment
  ☆65Updated last year