BioPP / bpp-phylLinks
Bio++ Phylogenetic Library
☆18Updated 3 weeks ago
Alternatives and similar repositories for bpp-phyl
Users that are interested in bpp-phyl are comparing it to the libraries listed below
Sorting:
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Updated 11 years ago
- Species Level Identification of Microbes from Metagenomes☆27Updated 6 years ago
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆112Updated last month
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Updated 3 years ago
- LAMBDA – the Local Aligner for Massive Biological DatA☆82Updated last year
- Useful set of classes for creating statistical genetic programs.☆52Updated 2 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- ☆24Updated 8 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆75Updated 12 years ago
- ☆44Updated 12 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Updated 5 years ago
- Implementation of the multiple sequential markovian coalescent☆89Updated 5 months ago
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆27Updated 4 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- PacBio BAM C++ library☆21Updated 2 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Updated last year
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated last year
- Bio::Phylo - Phyloinformatic analysis using Perl☆17Updated last month
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 3 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated this week
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 5 years ago
- ☆78Updated 11 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- Estimate recombination rates from population genetic data☆70Updated 5 years ago
- Structural variant detection and association testing☆108Updated 2 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago