BioPP / bpp-phylLinks
Bio++ Phylogenetic Library
☆18Updated 2 weeks ago
Alternatives and similar repositories for bpp-phyl
Users that are interested in bpp-phyl are comparing it to the libraries listed below
Sorting:
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Updated 3 years ago
- Species Level Identification of Microbes from Metagenomes☆27Updated 6 years ago
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆111Updated last week
- Useful set of classes for creating statistical genetic programs.☆52Updated 2 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- LAMBDA – the Local Aligner for Massive Biological DatA☆82Updated last year
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 3 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- ☆78Updated 11 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Updated 5 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- Structural variant detection and association testing☆109Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆64Updated 9 months ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated 2 months ago
- Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)☆41Updated 2 years ago
- Find all significant local alignments between reads☆141Updated last year
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 5 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Fast and memory-efficient sequencing error corrector☆94Updated last year
- Maximum likelihood demultiplexing☆49Updated 9 months ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 4 years ago