Alternatives and similar repositories for applied_population_genetics

Users that are interested in applied_population_genetics are comparing it to the libraries listed below

• danlwarren / Evolution-2019-Phylogenetic-Methods-Workshop
  This repo contains tutorials and data for the workshop on phylogenetic methods being delivered at the 2019 Evolution conference in Provid…
  ☆14Updated 6 years ago
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆59Updated 2 months ago
• NovembreLab / PCAviz
  An R package to help in plotting PCA results nicely.
  ☆12Updated 5 years ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆34Updated 9 months ago
• YTLogos / ttplot
  Tao Yan's Plot Toolkit
  ☆12Updated 6 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆36Updated last year
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated 2 months ago
• coleoguy / evobir
  R package: Evolutionary biology in R
  ☆19Updated last month
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆21Updated 4 months ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆30Updated 8 months ago
• jendelman / diaQTL
  QTL analysis in diallel populations
  ☆12Updated last year
• mwpennell / geiger-v2
  A suite of methods and models for studying evolutionary radiations
  ☆24Updated 2 years ago
• kkeenan02 / diveRsity
  diveRsity: A comprehensive, general purpose population genetics analysis package.
  ☆26Updated 7 years ago
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆16Updated 7 years ago
• trayc7 / DPPDiv
  DPPDIV
  ☆12Updated 5 years ago
• macroevolution / bamm
  A program for multimodel inference on speciation and trait evolution
  ☆34Updated 8 years ago
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆25Updated 3 months ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆42Updated 3 months ago
• hemstrow / snpR
  ☆31Updated 2 months ago
• marcomilanesi / BITE
  BITE: BioInformatics tools for everyone
  ☆21Updated last year
• alexkychen / assignPOP
  Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…
  ☆16Updated 2 months ago
• jgx65 / hierfstat
  the hierfstat package
  ☆25Updated 11 months ago
• GuangchuangYu / ggtree-current-protocols
  Using ggtree to Visualize Data on Tree-Like Structure
  ☆25Updated 5 years ago
• nicocriscuolo / StructuRly
  Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
  ☆21Updated 11 months ago
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 7 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆29Updated 7 years ago
• chrchang / eigensoft
  Experimental EIGENSOFT performance improvements.
  ☆21Updated 11 years ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆149Updated 2 years ago