revbayes / revbayes.archive

Related projects: ⓘ

• bpp / bpp
  Bayesian analysis of genomic sequence data under the multispecies coalescent model
  ☆87Updated 2 weeks ago
• jade-cheng / ohana
  mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.
  ☆81Updated 3 years ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆105Updated 4 months ago
• revbayes / revbayes
  Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
  ☆56Updated this week
• faircloth-lab / phyluce
  software for UCE (and general) phylogenomics
  ☆77Updated 2 weeks ago
• nstenz / TICR
  ☆25Updated 3 years ago
• revbayes / revbayes_tutorial
  Compilation of tutorials for RevBayes
  ☆22Updated 6 years ago
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆27Updated 2 months ago
• ddarriba / modeltest
  Best-fit model selection
  ☆73Updated 6 months ago
• ksamuk / pixy
  Software for painlessly estimating average nucleotide diversity within and between populations
  ☆115Updated 3 months ago
• rambaut / Seq-Gen
  Sequence simulator
  ☆51Updated last month
• beast-dev / tracer
  Posterior summarisation in Bayesian phylogenetics
  ☆52Updated 3 weeks ago
• lczech / gappa
  A toolkit for analyzing and visualizing phylogenetic (placement) data
  ☆56Updated 2 months ago
• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆54Updated last week
• mdrasmus / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆48Updated 9 years ago
• danlwarren / RWTY
  R We There Yet?
  ☆30Updated 2 years ago
• ddarriba / jmodeltest2
  Automatically exported from code.google.com/p/jmodeltest2
  ☆74Updated 2 years ago
• FePhyFoFum / phyx
  phylogenetics tools for linux (and other mostly posix compliant) computers
  ☆111Updated 3 months ago
• stschiff / msmc
  Implementation of the multiple sequential markovian coalescent
  ☆85Updated 10 months ago
• thednainus / Bayesian_tutorial
  Tutorial on Bayesian phylogenetic analysis
  ☆44Updated 6 years ago
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆77Updated 2 years ago
• Cibiv / NextGenMap
  NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…
  ☆86Updated 5 years ago
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆29Updated last week
• tatumdmortimer / popgen-stats
  Scripts to calculate population genetics statistics
  ☆53Updated 6 years ago
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆41Updated this week
• mfumagalli / ngsTools
  Programs to analyse NGS data for population genetics purposes
  ☆161Updated 3 weeks ago
• grenaud / schmutzi
  Maximum a posteriori estimate of contamination for ancient samples
  ☆20Updated last year
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆69Updated last month
• fgvieira / ngsLD
  Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
  ☆43Updated 10 months ago
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆86Updated last month