agordon / fastx_toolkitLinks
FASTA/FASTQ pre-processing programs
☆192Updated 3 years ago
Alternatives and similar repositories for fastx_toolkit
Users that are interested in fastx_toolkit are comparing it to the libraries listed below
Sorting:
- Windowed Adaptive Trimming for fastq files using quality☆226Updated 8 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆250Updated 4 months ago
- Read trimming tool for Illumina NGS data.☆147Updated 10 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Genome Assembly and Annotation Service code☆216Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆279Updated 3 months ago
- Next generation sequencing reads de novo assembler.☆237Updated 2 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆283Updated 9 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆282Updated 2 weeks ago
- Program for aligning DNA sequences, a pairwise aligner.☆230Updated 5 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 3 weeks ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- BEDOPS: high-performance genomic feature operations☆354Updated 6 months ago
- Quality control for MinION sequencing data☆217Updated 2 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆240Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 4 months ago
- ☆295Updated this week
- UCSC command line bioinformatic utilities☆185Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- TransDecoder source☆298Updated last month
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆214Updated this week
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- GFF and GVF specification documents☆216Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 4 months ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- GFF and GTF file manipulation and interconversion☆309Updated last year