davidemms / SHOOT
SHOOT.bio - the phylogenetic search engine
☆24Updated last year
Alternatives and similar repositories for SHOOT:
Users that are interested in SHOOT are comparing it to the libraries listed below
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated last year
- STAG: Species Tree from All Genes☆32Updated 6 years ago
- Tiberius is a deep learning gene finder.☆44Updated this week
- Bacterial GWAS analysis☆34Updated last month
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last week
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 5 months ago
- Gene-flank analysis tool☆26Updated last month
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆61Updated 3 weeks ago
- IslandPath standalone software☆31Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆51Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆30Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- ☆43Updated 9 months ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆47Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆28Updated 3 weeks ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Visualize whole genome alignments as linear maps☆70Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆33Updated 3 weeks ago
- ☆27Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Recombination-free trees☆56Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year