davidemms / SHOOTLinks
SHOOT.bio - the phylogenetic search engine
☆25Updated 2 years ago
Alternatives and similar repositories for SHOOT
Users that are interested in SHOOT are comparing it to the libraries listed below
Sorting:
- Gene-flank analysis tool☆27Updated 6 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆26Updated 2 weeks ago
- Visualize whole genome alignments as linear maps☆73Updated 9 months ago
- Eukaryotic genome annotation software.☆18Updated this week
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Convert GFF, fastas, annotation table and species name into Genbank.☆14Updated last month
- Bacterial GWAS analysis☆40Updated 3 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- ☆27Updated 5 years ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Find Unique genomic Regions☆30Updated 2 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 3 months ago
- IslandPath standalone software☆32Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- ☆45Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- ☆52Updated 4 years ago
- tree visualization for tree + annotation data☆39Updated last week
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 3 months ago
- Convert genbank files to a swath of other formats☆18Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆37Updated 3 weeks ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆45Updated 3 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago