Evolution simulator with extinct lineages
☆25Apr 3, 2025Updated last year
Alternatives and similar repositories for Zombi
Users that are interested in Zombi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated last year
- ☆14Mar 28, 2018Updated 8 years ago
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- SHOOT.bio - the phylogenetic search engine☆27Jun 1, 2023Updated 3 years ago
- ☆13Oct 13, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆17Feb 1, 2021Updated 5 years ago
- locally query the ncbi taxonomy☆39Dec 8, 2022Updated 3 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Jun 26, 2026Updated 2 months ago
- ☆82May 2, 2026Updated 3 months ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- A graphical interface for sklearn classification to introduce machine learning to biologists☆14Mar 19, 2025Updated last year
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- The lib CBioInfCpp.h contains 3 groups of functions for C++: "Input-Output", "Working with strings", "Working with graphs". Data structu…☆14Jan 8, 2024Updated 2 years ago
- Python library to simulate evolutionary sequence data☆80Dec 16, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated this week
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 6 years ago
- ☆16Jun 2, 2021Updated 5 years ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Oct 21, 2022Updated 3 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- Align sequences and then parse features.☆17Oct 24, 2025Updated 10 months ago
- This library can be used for human thermal detection. There are examples to read temperature readings as quickly as possible and read the…☆17Jan 8, 2025Updated last year
- ☆12Feb 14, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A program for divvying or partially filtering multiple sequence alignments☆29Oct 14, 2019Updated 6 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 5 months ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆55May 14, 2025Updated last year
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆45Apr 25, 2024Updated 2 years ago
- Working space for the GIAB TR benchmarking project☆24Oct 24, 2024Updated last year
- R codes and supporting files for an introductory level course on computational biology.☆14Jun 18, 2020Updated 6 years ago
- Bio++ Program Suite☆18Jul 10, 2026Updated last month
- Effect of tokenization on transformers for biological sequence☆23Dec 31, 2025Updated 8 months ago
- An automated workflow for processing ddRADseq data using Stacks v2.4. Starts with sequencer files, and ends with various input files for …☆10Apr 25, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- Bitarray implementation in Nim☆10Dec 14, 2020Updated 5 years ago
- An open-source Dynamic Light Scattering hardware and software☆13Feb 27, 2020Updated 6 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 3 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year