Evolution simulator with extinct lineages
☆25Apr 3, 2025Updated last year
Alternatives and similar repositories for Zombi
Users that are interested in Zombi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated last year
- ☆14Mar 28, 2018Updated 8 years ago
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- SHOOT.bio - the phylogenetic search engine☆27Jun 1, 2023Updated 3 years ago
- ☆12Oct 13, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆17Feb 1, 2021Updated 5 years ago
- locally query the ncbi taxonomy☆39Dec 8, 2022Updated 3 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Jun 26, 2026Updated 3 weeks ago
- ☆83May 2, 2026Updated 2 months ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- A graphical interface for sklearn classification to introduce machine learning to biologists☆14Mar 19, 2025Updated last year
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- The lib CBioInfCpp.h contains 3 groups of functions for C++: "Input-Output", "Working with strings", "Working with graphs". Data structu…☆14Jan 8, 2024Updated 2 years ago
- Python library to simulate evolutionary sequence data☆80Dec 16, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assign taxonomic ranks based on evolutionary divergence.☆23Mar 3, 2026Updated 4 months ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Python package for stochastic simulations☆18Updated this week
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 6 years ago
- ☆16Jun 2, 2021Updated 5 years ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Oct 21, 2022Updated 3 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- Align sequences and then parse features.☆17Oct 24, 2025Updated 8 months ago