AADavin / ZombiLinks
Evolution simulator with extinct lineages
☆25Updated 7 months ago
Alternatives and similar repositories for Zombi
Users that are interested in Zombi are comparing it to the libraries listed below
Sorting:
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
 - Error correction for Illumina RNA-seq reads☆67Updated last year
 - Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
 - SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
 - orthology assignment using phylogenetic and network analyses☆49Updated last week
 - More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
 - Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
 - Visualize whole genome alignments as linear maps☆73Updated 2 months ago
 - ☆66Updated this week
 - Estimating k-mer coverage histogram of genomics data☆76Updated last year
 - ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 7 months ago
 - In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
 - The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 2 months ago
 - Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆92Updated 4 months ago
 - FastOMA is a scalable software package to infer orthology relationship.☆83Updated last week
 - Detecting multi-genome synteny using minimizer graph mapping☆84Updated last week
 - This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
 - Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆71Updated 3 weeks ago
 - de novo virus assembler of Illumina paired reads☆57Updated 4 years ago
 - hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last week
 - Large genome reassembly based on Hi-C data, continuation of GRAAL☆42Updated last year
 - A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
 - perSVade: personalized Structural Variation detection☆40Updated last month
 - Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
 - mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
 - Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
 - MIRA sequence assembler☆30Updated 10 months ago
 - A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
 - Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
 - ☆34Updated last year