simonwhelan / DivvierLinks
A program for divvying or partially filtering multiple sequence alignments
☆27Updated 5 years ago
Alternatives and similar repositories for Divvier
Users that are interested in Divvier are comparing it to the libraries listed below
Sorting:
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated this week
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 9 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 9 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- ☆16Updated 2 months ago
- ☆26Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- ☆41Updated last year
- Gene tree - species tree reconciliation from gene tree distributions☆34Updated 2 weeks ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated last month
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- orthology assignment using phylogenetic and network analyses☆47Updated 6 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 6 months ago
- MFannot is a program for the annotation of mitochondrial and plastid genomes☆22Updated last year
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- A program for detection of tRNA genes☆67Updated 2 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 2 weeks ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆39Updated 5 months ago
- tree visualization for tree + annotation data☆40Updated 3 months ago
- Pangenome analysis of eukaryotes.☆19Updated 4 years ago
- ☆22Updated 11 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago