simonwhelan / DivvierLinks
A program for divvying or partially filtering multiple sequence alignments
☆27Updated 5 years ago
Alternatives and similar repositories for Divvier
Users that are interested in Divvier are comparing it to the libraries listed below
Sorting:
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 8 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆38Updated 4 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- orthology assignment using phylogenetic and network analyses☆45Updated 5 months ago
- ☆16Updated last month
- ☆26Updated 4 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆29Updated 3 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆32Updated 2 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆38Updated 2 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- ☆25Updated 9 years ago
- UFCG: Universal Fungal Core Genes☆34Updated last week
- ☆38Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Evaluating Nanopore-based bacterial variant calling☆19Updated 2 weeks ago
- ☆42Updated last year
- Learning and Aligning Large Protein Families with support of protein language models.☆27Updated last month
- Python tool to reduce size and redundancy of phylogenetic datasets☆44Updated 2 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆78Updated last month
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated 3 weeks ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 4 months ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 2 weeks ago