A program for divvying or partially filtering multiple sequence alignments
☆27Oct 14, 2019Updated 6 years ago
Alternatives and similar repositories for Divvier
Users that are interested in Divvier are comparing it to the libraries listed below
Sorting:
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Jan 20, 2026Updated last month
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆40Feb 22, 2026Updated last week
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆84Updated this week
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- Program for estimating dN/dS in overlapping genes (OLGs)☆14Dec 2, 2022Updated 3 years ago
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆27Jun 1, 2023Updated 2 years ago
- ☆17Oct 21, 2024Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆16May 27, 2024Updated last year
- visualization of phylogenetic output files☆14Oct 23, 2023Updated 2 years ago
- Clann: constructing consensus trees and supertrees from multiple source trees☆18Mar 23, 2025Updated 11 months ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated last year
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆226Jan 4, 2026Updated last month
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioi…☆19Dec 10, 2024Updated last year
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Within-species genome-wide dN/dS estimation from very many genomes☆23Oct 26, 2020Updated 5 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Nov 14, 2025Updated 3 months ago
- Best-fit model selection☆87Mar 21, 2024Updated last year
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- ☆21Sep 12, 2019Updated 6 years ago
- Calculate summary statistics and manipulate multiple sequence alignments☆91Jan 28, 2026Updated last month
- ☆26Jan 26, 2026Updated last month
- spruceup☆25Aug 15, 2025Updated 6 months ago
- An ultrafast and memory efficient tool for phylogenomics☆26Jan 31, 2026Updated last month
- ☆11Mar 4, 2025Updated 11 months ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparativ…☆15Sep 22, 2023Updated 2 years ago
- Sorting and subsampling phylogenomic datasets☆28Apr 9, 2025Updated 10 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- official repository for the UEA sRNA Workbench☆10May 31, 2023Updated 2 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago