Alternatives and similar repositories for light_phylogeny:

Users that are interested in light_phylogeny are comparing it to the libraries listed below

• luizirber / niffler
  Simple and transparent support for compressed files.
  ☆76Updated this week
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆87Updated 3 weeks ago
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated 11 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated 8 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆74Updated this week
• 38 / grass
  ☆21Updated 2 years ago
• hhandika / segul
  An ultrafast and memory efficient tool for phylogenomics
  ☆24Updated 2 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 3 weeks ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• anp / parasailors
  Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.
  ☆22Updated 8 years ago
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆22Updated this week
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies.
  ☆15Updated 3 years ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• luizirber / nthash
  ntHash implementation in Rust
  ☆35Updated 6 months ago
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆93Updated last year
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆37Updated this week
• jeff-k / bio-seq
  Bit packed and well-typed biological sequences
  ☆26Updated this week
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• jguhlin / sfasta
  sfasta
  ☆35Updated last month
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆22Updated 2 years ago
• jeanmanguy / spideog
  🐦 spideog - Command line utility for Kraken2 reports.
  ☆12Updated 4 years ago
• arewebioyet / arewebioyet.github.io
  Rust in bioinformatics and computational biology
  ☆20Updated 2 years ago
• chfi / rs-gfa
  GFA parser in Rust
  ☆30Updated last year
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆77Updated last week
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆14Updated 2 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆27Updated 6 months ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• jakobnissen / alen
  Simple terminal alignment viewer
  ☆80Updated 5 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year