simonpenel / light_phylogenyLinks
Light phylogeny library for Rust
☆10Updated 4 months ago
Alternatives and similar repositories for light_phylogeny
Users that are interested in light_phylogeny are comparing it to the libraries listed below
Sorting:
- Simple and transparent support for compressed files.☆80Updated 7 months ago
- Rust bindings to minimap2 library☆101Updated 2 weeks ago
- Parallel Construction of Suffix Arrays in Rust☆26Updated 4 months ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆21Updated 5 months ago
- FASTA and FASTQ parsing in Rust☆78Updated 6 months ago
- A genomic minhashing implementation in Rust☆98Updated 3 months ago
- ☆22Updated 3 years ago
- Foundations for the Rust omics ecosystem.☆11Updated this week
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- Bit-packed and well-typed biological sequences☆35Updated 2 weeks ago
- Alignment-based gene expression quantification☆28Updated 3 weeks ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆18Updated 3 months ago
- Rust package for constructing and analyzing phylogenies.☆15Updated 4 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆31Updated last year
- ntHash implementation in Rust☆36Updated last year
- Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.☆21Updated 9 years ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Updated 4 years ago
- Rust utility code☆32Updated last year
- Just another minhash implementation.☆12Updated 3 weeks ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- ☆50Updated 3 years ago
- ☆57Updated 3 years ago
- Rust in bioinformatics and computational biology☆19Updated 2 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆128Updated 4 years ago
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆90Updated this week
- A library of common biomedical types.☆39Updated 5 months ago
- fast, reliable and handy demultiplexing tool for fastx files☆13Updated last month
- Fast approximate string searching☆54Updated 3 weeks ago
- Efficient querying of biological databases☆42Updated last month
- Fast sequence distance estimates☆15Updated last month