simonpenel / light_phylogenyLinks
Light phylogeny library for Rust
☆10Updated 2 months ago
Alternatives and similar repositories for light_phylogeny
Users that are interested in light_phylogeny are comparing it to the libraries listed below
Sorting:
- Simple and transparent support for compressed files.☆76Updated 5 months ago
- Rust bindings to minimap2 library☆101Updated 2 weeks ago
- FASTA and FASTQ parsing in Rust☆79Updated 4 months ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆21Updated 2 months ago
- A genomic minhashing implementation in Rust☆99Updated last month
- An ultrafast and memory efficient tool for phylogenomics☆26Updated last week
- ☆22Updated 2 years ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆18Updated last week
- Rust package for constructing and analyzing phylogenies.☆15Updated 2 months ago
- ntHash implementation in Rust☆36Updated last year
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated last year
- Foundations for the Rust omics ecosystem.☆11Updated 3 weeks ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆31Updated last year
- Bit-packed and well-typed biological sequences☆35Updated 2 months ago
- Simple terminal alignment viewer☆83Updated 4 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆18Updated 3 weeks ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- GFA parser in Rust☆31Updated 2 years ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆12Updated 4 years ago
- Parallel Construction of Suffix Arrays in Rust☆24Updated 2 months ago
- Alignment-based gene expression quantification☆29Updated 3 months ago
- ☆51Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated 7 months ago
- Rust in bioinformatics and computational biology☆20Updated 2 years ago
- Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.☆22Updated 8 years ago
- Rust implmentation of VCF parser☆23Updated 2 years ago
- bgzip support for Rust☆16Updated last year
- Just another minhash implementation.☆12Updated last week
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- Rust utility code☆33Updated last year