A toolkit for analyzing and visualizing phylogenetic placement data
☆65Apr 28, 2026Updated 2 months ago
Alternatives and similar repositories for gappa
Users that are interested in gappa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Massively parallel phylogenetic placement of genetic sequences☆90Jun 14, 2026Updated last month
- A library for working with phylogenetic and population genetic data.☆67Updated this week
- Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees☆13Jan 31, 2025Updated last year
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated 10 months ago
- Semi-Automatic Taxonomy Improvement and Validation Algorithm☆21Jan 8, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆43Apr 2, 2024Updated 2 years ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆31Updated this week
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Jul 16, 2026Updated last week
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Mar 16, 2026Updated 4 months ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆86Feb 26, 2026Updated 4 months ago
- A robust and fast clustering method for amplicon-based studies☆148Updated this week
- Phylogenetic placement and downstream analysis☆95Jan 28, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Strain resolver for metagenomics☆82Aug 2, 2024Updated last year
- Goalign : a set of command line tools and an API to manipulate multiple sequence alignments.☆90Jul 15, 2026Updated last week
- phylogenetics tools for linux (and other mostly posix compliant) computers☆127Apr 18, 2026Updated 3 months ago
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 8 months ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆36Apr 15, 2026Updated 3 months ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 5 months ago
- Bayesian species delimitation integrating genes and traits☆12Aug 17, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Phylogenetic Isometric Log Ratio☆19Apr 1, 2026Updated 3 months ago
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 weeks ago
- [AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning☆25Jan 26, 2024Updated 2 years ago
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 11 months ago
- Detection of incorrectly labeled sequences across kingdoms☆87Oct 25, 2022Updated 3 years ago
- Python programming workshop for bioinformatics☆10Jul 13, 2021Updated 5 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆23May 19, 2026Updated 2 months ago
- tree visualization for tree + annotation data☆62Jun 17, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- phylogenetic analyses informed by deep mutational scanning data☆15Apr 5, 2026Updated 3 months ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆472Jul 6, 2026Updated 2 weeks ago
- ☆12Aug 13, 2024Updated last year
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆23Aug 19, 2021Updated 4 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆21Nov 24, 2024Updated last year